Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01472 ATGGGAAGGGTAAAGCTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCGAAAAGGAAACATGGGATTATGAAGAAGGCTAACGAGTTAGCGATATTGTGTGACATAGACATTATTCTACTCATGTTTTCACCTACCGGAAAGCCCTCATTATGCAGTGGAAAGCGCAGTAGTATTGAAGAAGTCATTGCAAAGTTTGCTCAACTAACTCCTCAAGAAAGGGCTAAAAGGTATGGGAGTTTTCTTGTTTGCGCTCTGAAGAAAACTTTCAAGAAATTAGATCATGATGTCAATATTGAAGAATTCTTGGGTACAAGTACTCAGACCATTGAGGACTTGGCTGGCCAAGCAAAGTTATTACAAGCTCAACTTTCTGAAATACACAATAGATTGAGCTATTGGACCAATCCTGATAAGATAAATAGTGTAGAGCATTTGACCCAAATGGAAGATTCACTGAGGGAGTCGCTAAACCAAATTCAAACACATAAGGAAAATCTACAGAAGCATCCTCTTATTCCATTAGAATGTTCTAGTCAGTTCCAAAATGGAATGCATATACCTTTCAGAATGGGCGCTGAGCAACAGGTCCAACCTTACTCATGGATTCCAAATAATGACAGTCATCACATAATTTTGCCGCCCGAGGAGCCTCACTTGCTTTCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTATTCTGGGTATTTCGGCACTGGTAGAAGAAGTCCAGAGATATCTAATTCTGGGCAAGAAAATGGAGTTCTCCATGAATTAAGCAGAACAGCAGCTCTAAGACCTCAACTAGGTGGGCAGTTTCCTTATCTGCCATACAATGTCAATTATTTGAGCGACCCAAAATTTCAACTGACGACAGAGATGAATCCGCCTGCAAATCCCATGGACTATCATGTTAATGGGAGCTTTGAACCTCCAAGACCTGCATATGACGCCAACAATCACAACTGGACTTCAACTTCTGGCCCTTGTGCCGTAAATTTATTTGACGATCGACTATATCCACAGGCAAGTTATATCTCTCACAACTGA 1077 41.41 MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELAILCDIDIILLMFSPTGKPSLCSGKRSSIEEVIAKFAQLTPQERAKRYGSFLVCALKKTFKKLDHDVNIEEFLGTSTQTIEDLAGQAKLLQAQLSEIHNRLSYWTNPDKINSVEHLTQMEDSLRESLNQIQTHKENLQKHPLIPLECSSQFQNGMHIPFRMGAEQQVQPYSWIPNNDSHHIILPPEEPHLLSHRDVECSASSSFASYSGYFGTGRRSPEISNSGQENGVLHELSRTAALRPQLGGQFPYLPYNVNYLSDPKFQLTTEMNPPANPMDYHVNGSFEPPRPAYDANNHNWTSTSGPCAVNLFDDRLYPQASYISHN 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27448160 27450704 + Bda028309.1 Bda07g01472 10362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01472 358 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda07g01472 358 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Bda07g01472 358 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 353 - -
Bda07g01472 358 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 353 - -
Bda07g01472 358 Coils Coil 151 171 - -
Bda07g01472 358 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Bda07g01472 358 Coils Coil 115 135 - -
Bda07g01472 358 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01472 Bda-Chr7:27448160 Bda14g01027 Bda-Chr14:8651581 7.28E-25 dispersed
Bda10g01066 Bda-Chr10:44672294 Bda07g01472 Bda-Chr7:27448160 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16187 PF00319 SRF-TF 8.30E-18 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01472 - - jre:109009266 525.783