Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda07g01472 | ATGGGAAGGGTAAAGCTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCGAAAAGGAAACATGGGATTATGAAGAAGGCTAACGAGTTAGCGATATTGTGTGACATAGACATTATTCTACTCATGTTTTCACCTACCGGAAAGCCCTCATTATGCAGTGGAAAGCGCAGTAGTATTGAAGAAGTCATTGCAAAGTTTGCTCAACTAACTCCTCAAGAAAGGGCTAAAAGGTATGGGAGTTTTCTTGTTTGCGCTCTGAAGAAAACTTTCAAGAAATTAGATCATGATGTCAATATTGAAGAATTCTTGGGTACAAGTACTCAGACCATTGAGGACTTGGCTGGCCAAGCAAAGTTATTACAAGCTCAACTTTCTGAAATACACAATAGATTGAGCTATTGGACCAATCCTGATAAGATAAATAGTGTAGAGCATTTGACCCAAATGGAAGATTCACTGAGGGAGTCGCTAAACCAAATTCAAACACATAAGGAAAATCTACAGAAGCATCCTCTTATTCCATTAGAATGTTCTAGTCAGTTCCAAAATGGAATGCATATACCTTTCAGAATGGGCGCTGAGCAACAGGTCCAACCTTACTCATGGATTCCAAATAATGACAGTCATCACATAATTTTGCCGCCCGAGGAGCCTCACTTGCTTTCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTATTCTGGGTATTTCGGCACTGGTAGAAGAAGTCCAGAGATATCTAATTCTGGGCAAGAAAATGGAGTTCTCCATGAATTAAGCAGAACAGCAGCTCTAAGACCTCAACTAGGTGGGCAGTTTCCTTATCTGCCATACAATGTCAATTATTTGAGCGACCCAAAATTTCAACTGACGACAGAGATGAATCCGCCTGCAAATCCCATGGACTATCATGTTAATGGGAGCTTTGAACCTCCAAGACCTGCATATGACGCCAACAATCACAACTGGACTTCAACTTCTGGCCCTTGTGCCGTAAATTTATTTGACGATCGACTATATCCACAGGCAAGTTATATCTCTCACAACTGA | 1077 | 41.41 | MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELAILCDIDIILLMFSPTGKPSLCSGKRSSIEEVIAKFAQLTPQERAKRYGSFLVCALKKTFKKLDHDVNIEEFLGTSTQTIEDLAGQAKLLQAQLSEIHNRLSYWTNPDKINSVEHLTQMEDSLRESLNQIQTHKENLQKHPLIPLECSSQFQNGMHIPFRMGAEQQVQPYSWIPNNDSHHIILPPEEPHLLSHRDVECSASSSFASYSGYFGTGRRSPEISNSGQENGVLHELSRTAALRPQLGGQFPYLPYNVNYLSDPKFQLTTEMNPPANPMDYHVNGSFEPPRPAYDANNHNWTSTSGPCAVNLFDDRLYPQASYISHN | 358 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 27448160 | 27450704 | + | Bda028309.1 | Bda07g01472 | 10362 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda07g01472 | 358 | CDD | MADS_SRF_like | 2 | 82 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Bda07g01472 | 358 | Gene3D | - | 14 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Bda07g01472 | 358 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Bda07g01472 | 358 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Bda07g01472 | 358 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda07g01472 | 358 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda07g01472 | 358 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda07g01472 | 358 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 | 1 | 353 | - | - | |
Bda07g01472 | 358 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 353 | - | - | |
Bda07g01472 | 358 | Coils | Coil | 151 | 171 | - | - | |
Bda07g01472 | 358 | SUPERFAMILY | SRF-like | 2 | 88 | IPR036879 | GO:0003677|GO:0046983 | |
Bda07g01472 | 358 | Coils | Coil | 115 | 135 | - | - | |
Bda07g01472 | 358 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g01472 | Bda-Chr7:27448160 | Bda14g01027 | Bda-Chr14:8651581 | 7.28E-25 | dispersed | |
Bda10g01066 | Bda-Chr10:44672294 | Bda07g01472 | Bda-Chr7:27448160 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16187 | PF00319 | SRF-TF | 8.30E-18 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda07g01472 | - | - | jre:109009266 | 525.783 |