Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01472 ATGGGAAGGGTAAAGCTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCGAAAAGGAAACATGGGATTATGAAGAAGGCTAACGAGTTAGCGATATTGTGTGACATAGACATTATTCTACTCATGTTTTCACCTACCGGAAAGCCCTCATTATGCAGTGGAAAGCGCAGTAGTATTGAAGAAGTCATTGCAAAGTTTGCTCAACTAACTCCTCAAGAAAGGGCTAAAAGGTATGGGAGTTTTCTTGTTTGCGCTCTGAAGAAAACTTTCAAGAAATTAGATCATGATGTCAATATTGAAGAATTCTTGGGTACAAGTACTCAGACCATTGAGGACTTGGCTGGCCAAGCAAAGTTATTACAAGCTCAACTTTCTGAAATACACAATAGATTGAGCTATTGGACCAATCCTGATAAGATAAATAGTGTAGAGCATTTGACCCAAATGGAAGATTCACTGAGGGAGTCGCTAAACCAAATTCAAACACATAAGGAAAATCTACAGAAGCATCCTCTTATTCCATTAGAATGTTCTAGTCAGTTCCAAAATGGAATGCATATACCTTTCAGAATGGGCGCTGAGCAACAGGTCCAACCTTACTCATGGATTCCAAATAATGACAGTCATCACATAATTTTGCCGCCCGAGGAGCCTCACTTGCTTTCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTATTCTGGGTATTTCGGCACTGGTAGAAGAAGTCCAGAGATATCTAATTCTGGGCAAGAAAATGGAGTTCTCCATGAATTAAGCAGAACAGCAGCTCTAAGACCTCAACTAGGTGGGCAGTTTCCTTATCTGCCATACAATGTCAATTATTTGAGCGACCCAAAATTTCAACTGACGACAGAGATGAATCCGCCTGCAAATCCCATGGACTATCATGTTAATGGGAGCTTTGAACCTCCAAGACCTGCATATGACGCCAACAATCACAACTGGACTTCAACTTCTGGCCCTTGTGCCGTAAATTTATTTGACGATCGACTATATCCACAGGCAAGTTATATCTCTCACAACTGA 1077 41.41 MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELAILCDIDIILLMFSPTGKPSLCSGKRSSIEEVIAKFAQLTPQERAKRYGSFLVCALKKTFKKLDHDVNIEEFLGTSTQTIEDLAGQAKLLQAQLSEIHNRLSYWTNPDKINSVEHLTQMEDSLRESLNQIQTHKENLQKHPLIPLECSSQFQNGMHIPFRMGAEQQVQPYSWIPNNDSHHIILPPEEPHLLSHRDVECSASSSFASYSGYFGTGRRSPEISNSGQENGVLHELSRTAALRPQLGGQFPYLPYNVNYLSDPKFQLTTEMNPPANPMDYHVNGSFEPPRPAYDANNHNWTSTSGPCAVNLFDDRLYPQASYISHN 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27448160 27450704 + Bda028309.1 Bda07g01472 10362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01472 358 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda07g01472 358 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Bda07g01472 358 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda07g01472 358 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 353 - -
Bda07g01472 358 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 353 - -
Bda07g01472 358 Coils Coil 151 171 - -
Bda07g01472 358 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Bda07g01472 358 Coils Coil 115 135 - -
Bda07g01472 358 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01472 - - - jre:109009266 525.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01472 Bda-Chr7:27448160 Bda14g01027 Bda-Chr14:8651581 7.28E-25 dispersed
Bda10g01066 Bda-Chr10:44672294 Bda07g01472 Bda-Chr7:27448160 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16187 PF00319 SRF-TF 8.30E-18 No_clan Bda TF