Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01480 ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCTGGAGCTTCCAAAACCTATCCGCAGCAGGCCGGTACCATTCGCAAGAACGGTTACATAGTCATCAAGGGCAGACCTTGCAAGGTTGTGGAGGTCTCCACTTCTAAAACCGGTAAGCATGGTCATGCTAAATGTCACTTTGTTGCAATTGACATCTTCACTGCCAAAAAGTTGGAAGATATTGTTCCTTCTTCACACAATTGTGATGTACCCCATGTTACCAGAACTGACTATCAGTTGATTGATATCTCTGAGGATGGATTTGTTAGTCTGCTGACGGACAATGGTAGCACCAAGGATGACCTGAGGCTTCCAACCGATGACAACCTTCTGACTCAGATTAAAGATGGATTTTCTGAGGGTAAGGATCTGGTCGTCTCTGTTATGTCTGCAATGGGGGAAGAGCAGATTTGTGCACTCAAAGACATTGGCCCCAAGTAG 480 46.88 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDDNLLTQIKDGFSEGKDLVVSVMSAMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27504947 27511649 - Bda028319.1 Bda07g01480 10370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01480 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda07g01480 159 CDD S1_eIF5A 86 156 - -
Bda07g01480 159 Gene3D - 1 85 IPR014722 -
Bda07g01480 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda07g01480 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda07g01480 159 Gene3D - 86 158 IPR012340 -
Bda07g01480 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda07g01480 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Bda07g01480 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Bda07g01480 159 MobiDBLite consensus disorder prediction 1 21 - -
Bda07g01480 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda07g01480 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda07g01480 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00098 Bda-Chr3:920357 Bda07g01480 Bda-Chr7:27504947 1.14E-107 dispersed
Bda03g00179 Bda-Chr3:1435718 Bda07g01480 Bda-Chr7:27504947 7.19E-108 dispersed
Bda07g01480 Bda-Chr7:27504947 Bda11g01711 Bda-Chr11:51515960 2.81E-105 dispersed
Bda10g01073 Bda-Chr10:44726450 Bda07g01480 Bda-Chr7:27504947 1.09E-116 wgd
Bda14g00862 Bda-Chr14:6643844 Bda07g01480 Bda-Chr7:27504947 6.42E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01480 K03263 K02180 oeu:111388373 317.775