Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01494 ATGAAGTTTGAAAATGAGTCCATTTTCTTCCATAAACCTGTATCCAAAGCTTCAGAACTCGTAAATGATGCTTTTGAGTCGGATAGATTGAAGACACAAAGTGAGGAAGATCGTGATGTAAATGGTGATAATGATCTTGACGATGACATGCAATACATGGCCAAAGATGAAATTTTTTTGAACCCGTGGAAGGAAGATTTCTCAAGCGTTCATCGTATGGACGACGAAGATGTTAAAGTTTTCAATGTAGAGTCATTTGAGAAAGATTCAGAAGTTTATGTCGAAAAAAATGTACCCCAATGTGATTTGCCGGAGCTTATAGTTTGTTACAAGGAAAATTCTTGCAATATTGTCAAAGACATTTGCATCGACGAGGGAATGATGCCTTCGCCTTCGCCAGTTCGAGTCATATTTGAAAGCGATAAGGGTGAGAATGATCAAAACGATGAATGGACGAAGGAGCTGCAGACTACTGATATAGCTATGGACAATGAGTTTAAGAATTCAGAGCAAAATTTGTCTGAGAAGGATTCAGTCGATCAAATAGACAGCAATGAGTTGGTTCCATCGATTGGTGTCGGATGTGATTTGGAGGATCTGAATACGAAGCAGACTGTAGAACTTGAACCCTGCAATGGAAATTTCAACGGCGATGATGAGGTTGAAGAAGATACTGTTCAGGTGTCTTCTGAGATAGAAAACTTGGCAAATTCTACCTTGGTTTATGCTTGTGAAGAATCGGAAAACGAGGCCGAGAAATCGACACCAACAGATCCATGTCCTGTTGCACTATTGGTAGAACCGAGAGATAACAGTATTCCGAACGATTTATCGTATAATAGCAAAGTGGAGAATGAAAGCATTACTTTCAACTTCAGTGCGTTAGTATCCTGTTCAAATGAAAAAACCGAATTCCCCGAAAATGGAGAAAATCGTGAGGACAGAAGCAAGTTGGACTTTGGGAAGTTATCCAAAGTCGAAGATGGTACGTCCGGCCAAATTCAATTCGGAATGGGAGAATCAAGTTTCTCCTCTGTAGGTCCTTTAGCCAGTATGGTAAACTATTCGGGTCCGGTAGCCTACTCCGGCAGCCTCTCTATTCGATCTGATAGCAGCACTACAAGCACTCGATCCTTTGCCTTCCCTATATTGCAAGCTGATTGGCATCATAACAGTCCGGTCAGGATGGGGAAGGCGGATCGGAGATTTTTCCGAAAAAACAAAGGGTGGAGGCAGGGTCTTTTTTGCTGTAGATTCTAG 1260 41.51 MKFENESIFFHKPVSKASELVNDAFESDRLKTQSEEDRDVNGDNDLDDDMQYMAKDEIFLNPWKEDFSSVHRMDDEDVKVFNVESFEKDSEVYVEKNVPQCDLPELIVCYKENSCNIVKDICIDEGMMPSPSPVRVIFESDKGENDQNDEWTKELQTTDIAMDNEFKNSEQNLSEKDSVDQIDSNELVPSIGVGCDLEDLNTKQTVELEPCNGNFNGDDEVEEDTVQVSSEIENLANSTLVYACEESENEAEKSTPTDPCPVALLVEPRDNSIPNDLSYNSKVENESITFNFSALVSCSNEKTEFPENGENREDRSKLDFGKLSKVEDGTSGQIQFGMGESSFSSVGPLASMVNYSGPVAYSGSLSIRSDSSTTSTRSFAFPILQADWHHNSPVRMGKADRRFFRKNKGWRQGLFCCRF 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27701926 27703697 - Bda028334.1 Bda07g01494 10384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01494 419 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 15 419 - -
Bda07g01494 419 MobiDBLite consensus disorder prediction 27 47 - -
Bda07g01494 419 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 15 419 IPR040378 GO:0009786
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01494 - - - bhj:120081347 222.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00516 Bda-Chr6:7434787 Bda07g01494 Bda-Chr7:27701926 2.29E-09 dispersed
Bda07g01494 Bda-Chr7:27701926 Bda10g01091 Bda-Chr10:44850414 6.08E-139 dispersed
Bda07g01488 Bda-Chr7:27624976 Bda07g01494 Bda-Chr7:27701926 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g993 . . . . . Bpe10g00909 . . . Cmo18g01111 . Cma18g01086 . Car18g01007 . Cpe09g00236 . . . . . . . . Cla05g02379 Cam05g2550 Cec05g2582 Cco05g2622 Clacu05g2550 Cmu05g2409 Cre05g2526 . . . . Lsi04g00348 . . . . Blo11g00799 Bda07g01494 . Bpe11g01661 . . . . . . . . . . . Cpe07g00098 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000606 4 19 2 1 2 2 5 2 2 2 2 2 4 2 2 4 2 2 5 2 2 2 2 2 2 2 2 16 5 1 104