Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01508 ATGTTAAAGGATGGATTCATAAATTTGAATCAGATTACGTTTTCAACTATGCTTGTTCTATCATCAAATGTGGAGTGTGTTCGTTTGGGTCGACAGATTCATGCACAAATAGTACAATTGGGTTTCGAATCATATCTGTTTGTTGTCAATCCTCTGATGGACATGTACGCAAAAGCTGGATTCATCAATGAAGCCCGACGAATTTTCGCCGAAATGCCCGAGAGGAATTTGGTGATGTACAATACAATGCTAACGGGGCTCCAACGATGCGGATTGATTGAAGAATCTCGGAATTTATTTCAAAAAATGCCAGAAAAAGATTCAATTTCATGGACAACTATCATTACAGGGCTCACTCAAAATGGGTTGGGGAGGGAAGCGATAAGTAGGTTTAGAGAAATGAGATTACAAGGTTTGAGTGTCGACCAATTCACTTTCGGAAGCGTATTGACTGCATGTGGCAGTCTATTGGCACTGGAACAAGGGCGGCAAATTCACACTTATGTTATCCGAACTGATTATAAGGATAACATATTTGTAGGTAGTGCTCTTGTTGATATGTATTGTAAGTGTAGACATATAAAATCTGCAGAAGCTGTTTTTAAGAGAATGAACTGCAAGAACTTAGTGACATGGACGACTATGCTCGTAGGGTATGGTCAGAACGGGTATGGTGAGGAAGCTATTAATATTTTTTGCGATATGCAGAGAAACGGTATTTGGCCCGATGATTTCACACTCGGGAGCGTAATTAGCTCGTGTGCGAATCTTGCAAGTTTGGAAGAGGGTGGGCAGTTTCATTGTCAAGCTTTGTTTTCTGGGTTGATTTCTTTTCTTACAGTTTCTAATGCTCTAATCACTTTATACGGCAAATGTGGAAGCATCGAAGATGCTAAGAAATTGTTCGATGAAATGAAAATTAGGGACGAAGTTTCTTGGACAGCACTGCTTTCTGGGTATGCTCAGTTCGGAAAAGCAAAAGAGACACTCGATTTGTTTGAAGGAATGTTGTCACATAAATTGAAACCGGATGGAATTACTTTCATAGGGGTTCTATCGGCTTGTAGTCGAGCCGGACTAGTGGATAAGGGGCGGTAA 1098 40.44 MLKDGFINLNQITFSTMLVLSSNVECVRLGRQIHAQIVQLGFESYLFVVNPLMDMYAKAGFINEARRIFAEMPERNLVMYNTMLTGLQRCGLIEESRNLFQKMPEKDSISWTTIITGLTQNGLGREAISRFREMRLQGLSVDQFTFGSVLTACGSLLALEQGRQIHTYVIRTDYKDNIFVGSALVDMYCKCRHIKSAEAVFKRMNCKNLVTWTTMLVGYGQNGYGEEAINIFCDMQRNGIWPDDFTLGSVISSCANLASLEEGGQFHCQALFSGLISFLTVSNALITLYGKCGSIEDAKKLFDEMKIRDEVSWTALLSGYAQFGKAKETLDLFEGMLSHKLKPDGITFIGVLSACSRAGLVDKGR 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28020272 28021369 - Bda028357.1 Bda07g01508 10398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01508 365 PANTHER - 137 364 - -
Bda07g01508 365 PANTHER - 4 103 - -
Bda07g01508 365 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Bda07g01508 365 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 137 364 - -
Bda07g01508 365 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 4 103 - -
Bda07g01508 365 Pfam PPR repeat 283 306 IPR002885 -
Bda07g01508 365 Pfam PPR repeat 50 76 IPR002885 -
Bda07g01508 365 Gene3D Tetratricopeptide repeat domain 1 107 IPR011990 GO:0005515
Bda07g01508 365 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Bda07g01508 365 Pfam PPR repeat family 207 256 IPR002885 -
Bda07g01508 365 Pfam PPR repeat family 106 153 IPR002885 -
Bda07g01508 365 Pfam PPR repeat family 309 356 IPR002885 -
Bda07g01508 365 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Bda07g01508 365 PANTHER - 89 246 - -
Bda07g01508 365 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 89 246 - -
Bda07g01508 365 Gene3D Tetratricopeptide repeat domain 113 275 IPR011990 GO:0005515
Bda07g01508 365 Gene3D Tetratricopeptide repeat domain 278 364 IPR011990 GO:0005515
Bda07g01508 365 TIGRFAM PPR: pentatricopeptide repeat domain 210 243 IPR002885 -
Bda07g01508 365 TIGRFAM PPR: pentatricopeptide repeat domain 283 307 IPR002885 -
Bda07g01508 365 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Bda07g01508 365 TIGRFAM PPR: pentatricopeptide repeat domain 49 78 IPR002885 -
Bda07g01508 365 TIGRFAM PPR: pentatricopeptide repeat domain 109 142 IPR002885 -
Bda07g01508 365 TIGRFAM PPR: pentatricopeptide repeat domain 78 106 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01508 - - - csv:101217254 561.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01508 Bda-Chr7:28020272 Bda04g00300 Bda-Chr4:46292169 1.42E-13 dispersed
Bda11g01179 Bda-Chr11:12182531 Bda07g01508 Bda-Chr7:28020272 1.27E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1009 . . . . . . . . Cmo04g01064 . . . Car04g00928 . . Cpe09g00246 . Bhi07g01433 . . . . . . . . . . . . . . . . . . . . . . . Bda07g01508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011082 1 3 0 0 1 0 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 0 0 0 1 0 0 0 1 19