Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01517 ATGGTTATATACAATTTTGGAAGCTCAACTGTATATTCTATGTGGAGTAGAGGGCATTTTCCCCTCTCGTTGAATGACTGTTCCTACTTGTTGAATGAGAGGTTTTCCAAATACCCAGTTCAGGTTTCTTCAAAATCATGCTGTTATTGTTGTTGTTCTTGTCGTGAATTTTCCTGTAATAGAGTGTCTAATTTCCCTAGTTTCTTATATGGGTTAAGGCAGTCCAATTTGATTCAATGGTCAGCTTCTAGGAGACTGATCTTGGGTGGTCTGGAAAGGAACTTTTCTCGGCTTCCGCATTATGAGATTGACAGAGTCTGTTATAAAGTTCCTCATTCTGCTAAACAGAGGAGGGTATGTAATAGAAGTGAGAGAAGAAGAAGTTTAGAATGTTGTTGTGTGCATTCTGAAGAGAGTACTGAATTTGATTCTGAGGATGATGGAGAGGCGTTGCTTAGATTGTTGATTGATGAGGAGGAGAGAGATGAATATTGTGATTGTTGTGAGAGAAGAAGAGCATCGTATGAGAGGGTGAACGGGGAGAAGAAACGAAATTATGGGAAGAGAGAAATGGCAATCATGTCATCTAGAAGTGTACTGATGGAGAAGAGACTGAGAAATGGTGGTGGTAGGAATAAATTAAGCTCACCAGATACCAAAACCATTGATAAGAGGAGGGACGTTTGCTGTAAATGCAACGGAGGTGAGACGGAAAATGGAGGTTCTGATTTCTTAGAGAGAAAATCAAATAATGGAGGCAAGAAAGTTAAAATTGAGCCCAGAAAAGAAAACTATAGAGTGGACAAAGGCATTTCAACTCATTCTAGAGGTGAAATTTACAGAAGAAGGAAAGGTGGTTCTAATAATTCATATTGTTACTCATTCCCTTCATCAGACACTTCAGAGAATGATACTGAAATCATAGACAAGCATAGTCTAATCTCGGAAGAACTTACAAATAAGGATAGAAGTCAGGAAAAGTTATCAAAAAGAAAATTGAAAGAGGAGATTGAGATGCGGAATTCAAGGGCTTCTCAGAAAGAAAATTCTTTATTGGAAAGTGCCATTAAATTAGATTCGAGGAAGAAACATGTGAAAAAAATTTCTCAAGTATCATCAATTGAAGAAACAAAGTCTGTGGCAGAATCATCCCAGATGCAGTCAAGAGTGTTGACCACCGATGAAGGGGCTTCAAGCTCACAGAAAAATTTCAATTATGGGAAAGATTATTCTACCTCCACCATGAGTTTGGATGGGGGAACAGAAGCGCAGAATGAGATAATGAGAAACCAAACTGTGGATTTGTCTTCTTCTGGGCAAAAATATGACGAATTTACAGAAGCTTCAGGAATCAGTTCCAGCAATTTTGGAAAAAGTTCTTGGTCTGCAAATAGTGTTAGTGCACAAAGAAACGAAGCTGCCAATTTTGATCAGAAAGCTGGGAACAGACATCACAAAATTTATGGCGTTGTCTCTGAAGAAACTAATTTAAGACAAGAGTCTAAATATCAGAAACAGGGTAGAATTGTGAAATTTCAAGAATATGATACCGAAGGTAACTCTAGTCGGCAGAGGAAGTCTAATACTGAAGTGAGTGCAAAAGAGAGTACAATTTCGGTTAAGGCTTCAGCTCAGGAGACAAACGAGCGACTCAACCAAACAAAAATTTATGTTGCTGGAAAGACTGACTCTCGACAGACATCCCAAAATGTAACTGAAATATCGGTTACCAACAACAGTAATTCTGACAGTGCTACGATTTCTGGGTTTGAAACTATAATAAAGAGCGAGGAACATGAGCCTGTTTTGGTTTCCACGTCACATCAGGGAAGAAAAAATCTACAGTCTGAGACAGATAAAAGAGGTTCTCGAAAACTCCAGTCTGGAAGTGTTTCCCAAGAGGTCGACATTTCTAAAAAAATAATTAGAACTTCGGAAGAAACTTTCAGAGAGAGAATTGATCATGAAGAAAGAAAGATACGACTACAGAAAAGGCCAGTCATACAAACAAGGAAAGAACATAATCAAACTGGTAGTGTGACCTTGCAAATAGAAGCGGGAAAAGAGGCAAGTCTTGATGGAGAATCGAGCTTTCTAGCATCTTTGAGGAGTCCACAAACTAGGACTAATGTGATTGATAAGGAGGAATCTAACAGATTTTCAGATGAAATATTAATTCCTCCCCCATCTCAATTAGTCACTAAGGATGACTTTCGTGCTGAGTTGACAAGTGGAACTATGGCTCAAAAAGTTTCTGGCCGTACGTCAGAAAGTGGATCTAGTTTTAAAGATAAATCCCATGTGTCACATTATAAATCCTATAGTGATGGTGAGAGTGGTGAGAGTTACAGGGAGCCTTTATTCATATCCCCAACCGAGGATGCACTAGGCTCAGCTGCTCGTTTTGAGCAGTCATCCGCACAGTTTGTTGGGGAGTTCATCAAGCAGGCAAGGGCTGAAGTCTCAACTTCAGAAATCCAGAAGGAAGAAACTGTGTATGGAACGAATCTGATGTATGAAGGGGAGAAAGAAATCCAAAGGAGTTCAAGTCGTTACGGTTCGGTAGACATTGAAATGAAGGATCGTCACTCACAAGGATCATCTCAGGGTTCTGGAACGAAGGGTCCTGATGATGACATGTGGCGTGTTACTGAACCAGCTGTTGAGAAGTCTTCCAAGGTAGAAGAACTGAAGGGCAGCTCAGAAACTGAAAATGCCATTGTGAAGAGAAATGGTAGGTCTTTGTGGAATATTATTGGGGAAATAATTCGGCTGAGATGGGTTTTACGTGCTGAAACCTCCAAAACATCTAAAAAATCTGGCGGAAAATCTTCTTCCAGTGAATCAAACAGTAATGAAACTTGGTTCTCTGGCCGCGAGCCTGAAGAAAACATTGACAACAATACAGAAACAGGCAGAATTATGCTACCAGAATCCACATCGTCAGAACGGTTGGAAATTGAGAAAAGTTCTACTCAAATTGAAGAGGCTTCAAATAAAACTGAATCAGAGAATGTTAAGTATCATGACGCAGATCCATCATCTCCTCCAAGTATTAAGGGAAGTGGGTCAACATCAGGAGGGAACTTGTTGGTTTCTGAAGAGGAAGTTTCAGGTTCAAGAGAAGATGGAAATAGACTTCCAGTTGTTTTGATGGGTGCAGGGATTACACTTTCATCATTACCTTTACCTGCTGAGAGCAAAAGTAAATACCCCATTGCCGAAAACATTTCACTTGGTGGAACTGATCCCTCTGGTAGTAGCTTAGTGGAGCCCTTGAAGTTGGAGTTATCAAAGCCAGAGGTAAAAGGGGGAGAATTGAAACTGAGGAAGTTCCAAAGAACGGCACAAGTCTCGAGAGATAGGTTTGATGAATGGGAAGAAGCATATTTAGTTGAGAACGAGCAGCGGAAAATGGACGAAATGTTTATGAGAGAAGCACTTGCTGAAGCGAAAAAGGCTGCTGATTTGTGGGAGGTGCCTGTCGGAGCTGTACTCGTGCGGCATGGAAAAATTATTGCTAGGGGATTCAATCTGCTTTTTCCCGACGGAGAAGGAAATGGATCGCAAACGGCAGACAAACCGGCTGCTCCTGTCCATCCGTTCCACCCAAATATGAGAGTTCGTCGAGGGGTACTATCTGCAGATTGTGCAGATGCGATGCAGCAATTTTTCCAGCGCAGGAGGAGAAAGAAGGAGAAAGAAGAGGGCTCTCCCCCAGCCACTCCCTCATGTCTCCCAGTTACACACTCTTCAGCCAAACTCATGAACAAAATGCATGATCTTTTCCATATGATGTTCTGTTTGTGA 3810 40.89 MVIYNFGSSTVYSMWSRGHFPLSLNDCSYLLNERFSKYPVQVSSKSCCYCCCSCREFSCNRVSNFPSFLYGLRQSNLIQWSASRRLILGGLERNFSRLPHYEIDRVCYKVPHSAKQRRVCNRSERRRSLECCCVHSEESTEFDSEDDGEALLRLLIDEEERDEYCDCCERRRASYERVNGEKKRNYGKREMAIMSSRSVLMEKRLRNGGGRNKLSSPDTKTIDKRRDVCCKCNGGETENGGSDFLERKSNNGGKKVKIEPRKENYRVDKGISTHSRGEIYRRRKGGSNNSYCYSFPSSDTSENDTEIIDKHSLISEELTNKDRSQEKLSKRKLKEEIEMRNSRASQKENSLLESAIKLDSRKKHVKKISQVSSIEETKSVAESSQMQSRVLTTDEGASSSQKNFNYGKDYSTSTMSLDGGTEAQNEIMRNQTVDLSSSGQKYDEFTEASGISSSNFGKSSWSANSVSAQRNEAANFDQKAGNRHHKIYGVVSEETNLRQESKYQKQGRIVKFQEYDTEGNSSRQRKSNTEVSAKESTISVKASAQETNERLNQTKIYVAGKTDSRQTSQNVTEISVTNNSNSDSATISGFETIIKSEEHEPVLVSTSHQGRKNLQSETDKRGSRKLQSGSVSQEVDISKKIIRTSEETFRERIDHEERKIRLQKRPVIQTRKEHNQTGSVTLQIEAGKEASLDGESSFLASLRSPQTRTNVIDKEESNRFSDEILIPPPSQLVTKDDFRAELTSGTMAQKVSGRTSESGSSFKDKSHVSHYKSYSDGESGESYREPLFISPTEDALGSAARFEQSSAQFVGEFIKQARAEVSTSEIQKEETVYGTNLMYEGEKEIQRSSSRYGSVDIEMKDRHSQGSSQGSGTKGPDDDMWRVTEPAVEKSSKVEELKGSSETENAIVKRNGRSLWNIIGEIIRLRWVLRAETSKTSKKSGGKSSSSESNSNETWFSGREPEENIDNNTETGRIMLPESTSSERLEIEKSSTQIEEASNKTESENVKYHDADPSSPPSIKGSGSTSGGNLLVSEEEVSGSREDGNRLPVVLMGAGITLSSLPLPAESKSKYPIAENISLGGTDPSGSSLVEPLKLELSKPEVKGGELKLRKFQRTAQVSRDRFDEWEEAYLVENEQRKMDEMFMREALAEAKKAADLWEVPVGAVLVRHGKIIARGFNLLFPDGEGNGSQTADKPAAPVHPFHPNMRVRRGVLSADCADAMQQFFQRRRRKKEKEEGSPPATPSCLPVTHSSAKLMNKMHDLFHMMFCL 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28220646 28225927 + Bda028368.1 Bda07g01517 10407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01517 1269 MobiDBLite consensus disorder prediction 524 546 - -
Bda07g01517 1269 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1183 1259 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 745 759 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 744 782 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 1017 1033 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 385 405 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 860 881 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 760 779 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 1226 1248 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 933 1044 - -
Bda07g01517 1269 Coils Coil 1269 1269 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 601 632 - -
Bda07g01517 1269 Gene3D Cytidine Deaminase, domain 2 1128 1193 - -
Bda07g01517 1269 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 1183 1259 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 514 546 - -
Bda07g01517 1269 SUPERFAMILY Cytidine deaminase-like 1124 1184 IPR016193 GO:0003824
Bda07g01517 1269 MobiDBLite consensus disorder prediction 938 958 - -
Bda07g01517 1269 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 879 1179 - -
Bda07g01517 1269 MobiDBLite consensus disorder prediction 982 1009 - -
Bda07g01517 1269 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 879 1179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01517 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - jre:109004334 564.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01498 Bda-Chr7:27755331 Bda07g01517 Bda-Chr7:28220646 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32