Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01520 ATGATTATAGATAACGCCATTAGAGAGTCTTCTTTCTCCTTCTCCAAAAGGTATTTCCATTGGAAGAACGAAGATGAAAGTGAGGAAGAAAGTCCAACTTTCGCCGCCGTTGCTGACAATTTCTGCGAGAAAAAGGAGAAAAGAGAAAAGCATTCTGTAATCTCTGTATCTAAACTCCGATTAGCTCTCACGTCTCTCTCGACAAACATGATACTTCAACGTTCGAACTCAGGCAGCAAATTTATAGGCACCATTTTCGGATACAAACAAAGGTACCTCCATTTCTGTTTTCAAAAAGAACCCAAGATAAACCCCATGTTTTTAATCGAGCTAGCTACGCCAACAAGCGTTCTAGTAAGAGAAATGGCTTCTGGATTAGTCAGAATCGCATTGGAAACCGAGAAAAAACCAGAAAAACACAAGTTTGCATATTTGAAGCTTTTGGAGGAGCATCAATGGCGAACGTACTGTAACGGGAAGAGCTACGGGTATACGATGAGGAGAGAGTGTGGTGATGTGGATTCGAAGGTTTTGAAAGCTTTGGAGCCGATAACGATGGGGGCTGGTGTTTTGCCTGTGAAAGCTAAAAATGGAGAATGTCCATCGTTCGAACGTGAAGTTCTGTACATGAGAGCGAAGTTCGAGCGAGTTGTGGGTTCTAGAGATTCAGAAGCGTTCTATATGATGAATGTGGATGGATCATATGGCCCTGAACTCTGCATCTATCTTCTCCGAGTTTAG 741 42.38 MIIDNAIRESSFSFSKRYFHWKNEDESEEESPTFAAVADNFCEKKEKREKHSVISVSKLRLALTSLSTNMILQRSNSGSKFIGTIFGYKQRYLHFCFQKEPKINPMFLIELATPTSVLVREMASGLVRIALETEKKPEKHKFAYLKLLEEHQWRTYCNGKSYGYTMRRECGDVDSKVLKALEPITMGAGVLPVKAKNGECPSFEREVLYMRAKFERVVGSRDSEAFYMMNVDGSYGPELCIYLLRV 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28288256 28288996 + Bda028372.1 Bda07g01520 10410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01520 246 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 82 246 IPR006460 GO:0010274
Bda07g01520 246 PANTHER PROTEIN MIZU-KUSSEI 1 5 246 IPR006460 GO:0010274
Bda07g01520 246 PANTHER OS01G0642600 PROTEIN 5 246 - -
Bda07g01520 246 Pfam Protein of unknown function, DUF617 82 245 IPR006460 GO:0010274
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01520 - - - twl:120002766 263.462
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02156 Bda07g01520 CCT
Bda07g01520 Bda11g01125 CCT
Bda01g02156 Bda07g01520 ECH
Bda07g01520 Bda11g01125 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01520 Bda-Chr7:28288256 Bda11g01125 Bda-Chr11:11177596 4.26E-74 dispersed
Bda14g00906 Bda-Chr14:7040006 Bda07g01520 Bda-Chr7:28288256 7.68E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g244 . Blo16g01046 . Bda11g01125 Bpe13g01322 . Bma14g01690 . Cmo04g01617 Cmo18g01075 . Cma18g01053 Car04g01596 . Sed14g0510 Cpe09g00264 Cpe01g01753 Bhi07g01383 Tan04g0913 Cmetu10g1393 Lac13g0446 Hepe10g1858 . . Cla05g02341 Cam05g2514 Cec05g2540 Cco05g2581 Clacu05g2508 Cmu05g2370 Cre05g2487 Cone13ag0866 Cone19ag0866 Cone6ag0479 Cone9ag0491 Lsi04g00301 Csa05g02071 Chy10g01106 Cme10g00304 . Blo11g00825 Bda07g01520 Bda11g01125 Bpe11g01682 . . Bma06g00777 . . . . . . . . . Bhi12g00826 . . . . . . Cla01g00565 Cam01g0588 Cec01g0580 Cco01g0604 Clacu01g0583 Cmu01g0554 Cre09g1953 Lsi09g00613 . . .
Vvi1g916 Blo01g00426 . Bda01g02156 . . Bpe10g00871 Bma14g01644 Bma15g00158 Cmo04g01735 Cmo18g01172 . Cma18g01151 . Car18g01060 Sed08g1983 Cpe09g00179 Cpe01g01464 Bhi07g01568 Tan04g1080 Cmetu10g1577 Lac13g0318 Hepe10g1741 . . Cla05g02442 Cam05g2627 Cec05g2661 Cco05g2699 Clacu05g2631 Cmu05g2485 Cre05g2598 Cone13ag0955 Cone19ag0947 Cone6ag0584 Cone9ag0587 Lsi04g00426 Csa05g02449 Chy10g01000 Cme10g00416 Blo06g00906 Blo11g00773 Bda07g01520 . Bpe11g01642 Bpe02g02343 Bma01g00099 . . . . Cma04g01657 . Car04g01697 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000518 5 3 5 6 5 3 4 3 3 3 3 3 6 3 3 6 3 4 6 2 3 3 3 4 3 3 3 6 3 2 112