Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01523 ATGTTCACTCCGCAAAGAAGGGCGTTGCCAGCCCTAGTTCTATCGCCGAGAAATGAATCCAATGAATTGCGGTCGAACGCTAGAGGCTTTGATAAAGGGAAGGCCGTGGCTTTTTTCGATGGCCCTCCGCCGCCGTTAAGTACGTTGGGCGTAAATGAGGAAGAGAAGACGATGTTAGGGTTGGATACTGGCGATATGAAGGATTGGAGGAGGTTTAGAGAGGCAGGGCTGTTGGATGAAGCGGCATTGGAGTCCAAGAATCTGGAAGCTCTTGTTGAGAAGGTTTCGAAGCTTCAAAATGAGCTTTTTAATTACCAATATAGTATGGGCCTTCTCTTGATGGAGAAGAAAGAGTGGACTTCAACGAACGAAGACATTGAACAGGAGCTTGCAGAAACTGAGGAGATCATTAAACGTGAACATTCAACTCATCTAATGCTACTATCCGAAGCTGAGAAGAGAGAGGAGAATAAGAGGAAAGCCTTAGCTTCTGAAAGGCAGTGTGTTGCTGAGCTTGAAAAAGCCTTGCGTTGCGTGATCGAGGAACATGCTGAAAACAAACTTGCATATGAGAAGAAAGTGGTTGACTCCAATGCTTTGGGGCTACAACTTGAAGAAAAATCGTTAGTTGTGGAGGAAAAACTGTGCGCCGCCGAAGCTACGCTTGGTGAGGTTAATCGGAAGAGTGCAGAAATAGAACTGAAGATGCATGAGATTGATACTCGTCAAAGCTTGCTTCAACGAGAACGCATGTCCCTTTGTAAAGAGCAAGAAAGCTGGAAAAAAAACTTCTATAAAGAAAGGGAAGAATTAATGCGTTTGGAGCAAAATTTGCAGTATAGAGAAGAAAGTTTATGTCAGAATCGGAAAATTTTTAGTGATAGAGATCAGAAGTTAAATGAAAATGATGGGTTTGTTAAGCAGAAAGAGATGAATCAAGAAGAGGCTGAAAAGAATATTGATTTGTCAAGATCATCTTTGATAGCAAAAGAAGATGACATCAATAAAAAACTTGCAGATCTAGAAGTCAAGGAAAAAGAAGCTGATTCCTTGAGAAGCTTGCTGGAGATGAAACAAAAAGACTTACTAGTTTTGCAAGAAAAACTTAGCAGGAGGGAAAGGGTGGACATTGAGATTTTGCTTGATAATCAAAGAGATATTTTGCGAAGGAAGGAGGAGGAGTTTGAGTTGGAATGGGAAGAAAAAAGGCTAGCGTTGGACAAGGAACATAATGAAAGGGTGCATGGGATTGCACAAACAGAAGCTGAAATGAACCATCAAGCAGAGAAGTTAGTAAAGCGAGAGCAAGCACTGGATGAGAAATCAAATAGAGTAAAAACAAAGGAAAAAAGTCTTGAAGTCAAGTTGAATACTCTAATTGAGAAGGAGAAAGTTATGAACGCTGAAGACAAAAAATTAGAGACTGAAAGACAGAAAATGCTTGCTGATAGAGAGAATTTGGATTCCCTTTTGGAAGCTGTTGACAAATTAAGAGCAGAAATTACCCATTTGGAGCAGCAAGTTGATGACGAGAGAAAAAAATTAGGGTTGGTCAGAGAAGAGAGATCAGAGTACATGCATTTGCAGCTGGAACTGAAGCAGGAAATTGGGAAATACAGAGTTCAGAAAGACTTGCTCCTTAAAGAAGGTAAAAATCTGAAGCAAGACAGAGAGATGTTCGAGAAAGAATGGGTACTTTTGGATGAGAAAAGAACTGAAGTTAGTAAGGAGATGAGAAGTCTCGATGAAGAAAGAGAGCAAGTAGAGAAATTGCGTCATGCTGTCCATGAGCGACAGAAAAAGGAAAATGATTTGTTACAAGACTATGTGCAGAAGGAGTTTGATGATCTCAAACTGCAGAAAGAATCATTTGAAGCTAACATGAAGCATGAGCATCTGGCGCTATCTGAAAAAGCTGAAAGTGAGCGTAAAATAATGATTCACGATTTTGAGGAGCAGAAAAATAATCTTGAAGCACAGTTGAGGAATTGGAAAAAGGAGGGAGATAGTATGCGGCAGGAAAGGGATAAAGCACTAGAGGAGGAGAAAGAGAGAGAAAAAATTAATATTCAACGCTTGAAAGACATTGTTCAAAGAGAAAGGGAAGATTTGACATCTGAAAGATACCAAATTGAAAAGGAGGAAAAGATGGTTGTATTGAACAGAAAACATCTGAAAGCTGACCAACTTGAAATAAATGAAGATATTGATAAACTGGATAAGCTGAGCAAGAAACTTAAGGATCAGCGGAAATGCCTTGTTCAGGAAAGGGGTGACTTCCTAAATTTTTTTGAGAAGTTCAAGAATTGTGAGAACTGTGGTGGAAAAGCTGAGGAATTCACACTAAATGATATCCAACTGCATGAAATAGAAGATCAGGCGGCCATTCGTTTGCCATTAATGGCTGATGGAAATTTAGCTGCTCCGAATTTGAAATCTGGTGGTGAGATATCTTGGCTCCGCAAATGTACGTCTAGGATTTTTAACCTATCTCCGGGTAAAAGGCTAGGGGATGTTCCAAAAGTTCCTTTGGAATCGTCATCGGGACAAGTTAAAGCAGAAATACAAGTGCAGGGGCCTAGTGTTTTAGTTAATGATGGGGTTACAGGGTTGGGACCTCAAATTACTTCTGTTATTGGCAGTAAAACAATTGACTCTGAAGGAATTGTCTCTAATAATGAGATCGGTGAAATGGATAATGAATATTTTCCATCAAATGATGATTGCAGTTTCTTAGCTAGCGGGAAAGATGACGAAGTTCCCGAAGTTTCCCAACTATCAGAGTTGAGAAGTGCACCTGGAAAAGGAAAAGAACGAAGAAAGTATAACTCTGGATTGAACAGAACACGTTCAGTGAAAGCTGTTGTTGAAGATGCAAAAGTATTTCTTGGGGAAACTCCGGAGAGCCCAGGTCCTTCAAATTTTATTGAGAAAAAAGATGGTAACACAGCTAGGAAAAGGCAACATGCACAAACTTTTAGTGTTACTGAAAATGAACTAGATTCTGGCAATGGTGAGAATTTTCCTGGCAGTGTCGCAGATGGGGGCCGTAGGAAAAGACGTCAAACAATGACTCCATCAAGGCCAACCCAGGGTCAAATGCGATACAATTTGAGGCGCACTAGACCTCAACCATCGACTGAGATGACAAACGTTGGGGAGAAAGACGGAGATGGCTGTACAACAAACATAGCACGAGAGCAGAATGATGTGTCCATTCTATCGCCAGATGCTCAGGGCAAAAATGCTCAAACTTTGGACATGGTGGCCACGACGGTAGTAAATTCCGTCGAAGATAATACTAAGTTGAGAGACAATTTAACGGAAAACGAGGAGGAAGACAATGAGGAGGAGATCTCGATCCAAGAAGATGAAGAGGAGTATGATGAACTGGAGCAGATTGATGATCCACCGACCATAACTAAAAAGATCTGGACTTTCTTCACTACGTGA 3453 40.75 MFTPQRRALPALVLSPRNESNELRSNARGFDKGKAVAFFDGPPPPLSTLGVNEEEKTMLGLDTGDMKDWRRFREAGLLDEAALESKNLEALVEKVSKLQNELFNYQYSMGLLLMEKKEWTSTNEDIEQELAETEEIIKREHSTHLMLLSEAEKREENKRKALASERQCVAELEKALRCVIEEHAENKLAYEKKVVDSNALGLQLEEKSLVVEEKLCAAEATLGEVNRKSAEIELKMHEIDTRQSLLQRERMSLCKEQESWKKNFYKEREELMRLEQNLQYREESLCQNRKIFSDRDQKLNENDGFVKQKEMNQEEAEKNIDLSRSSLIAKEDDINKKLADLEVKEKEADSLRSLLEMKQKDLLVLQEKLSRRERVDIEILLDNQRDILRRKEEEFELEWEEKRLALDKEHNERVHGIAQTEAEMNHQAEKLVKREQALDEKSNRVKTKEKSLEVKLNTLIEKEKVMNAEDKKLETERQKMLADRENLDSLLEAVDKLRAEITHLEQQVDDERKKLGLVREERSEYMHLQLELKQEIGKYRVQKDLLLKEGKNLKQDREMFEKEWVLLDEKRTEVSKEMRSLDEEREQVEKLRHAVHERQKKENDLLQDYVQKEFDDLKLQKESFEANMKHEHLALSEKAESERKIMIHDFEEQKNNLEAQLRNWKKEGDSMRQERDKALEEEKEREKINIQRLKDIVQREREDLTSERYQIEKEEKMVVLNRKHLKADQLEINEDIDKLDKLSKKLKDQRKCLVQERGDFLNFFEKFKNCENCGGKAEEFTLNDIQLHEIEDQAAIRLPLMADGNLAAPNLKSGGEISWLRKCTSRIFNLSPGKRLGDVPKVPLESSSGQVKAEIQVQGPSVLVNDGVTGLGPQITSVIGSKTIDSEGIVSNNEIGEMDNEYFPSNDDCSFLASGKDDEVPEVSQLSELRSAPGKGKERRKYNSGLNRTRSVKAVVEDAKVFLGETPESPGPSNFIEKKDGNTARKRQHAQTFSVTENELDSGNGENFPGSVADGGRRKRRQTMTPSRPTQGQMRYNLRRTRPQPSTEMTNVGEKDGDGCTTNIAREQNDVSILSPDAQGKNAQTLDMVATTVVNSVEDNTKLRDNLTENEEEDNEEEISIQEDEEEYDELEQIDDPPTITKKIWTFFTT 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28311738 28317595 - Bda028375.1 Bda07g01523 10413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01523 1150 Coils Coil 78 101 - -
Bda07g01523 1150 MobiDBLite consensus disorder prediction 1100 1137 - -
Bda07g01523 1150 PANTHER PROTEIN CROWDED NUCLEI 4 1 1150 IPR040418 GO:0005634|GO:0006997
Bda07g01523 1150 PANTHER PROTEIN CROWDED NUCLEI 3 1 1150 - -
Bda07g01523 1150 Coils Coil 1114 1134 - -
Bda07g01523 1150 MobiDBLite consensus disorder prediction 1110 1134 - -
Bda07g01523 1150 Coils Coil 567 601 - -
Bda07g01523 1150 MobiDBLite consensus disorder prediction 927 946 - -
Bda07g01523 1150 Coils Coil 736 756 - -
Bda07g01523 1150 Coils Coil 647 714 - -
Bda07g01523 1150 Coils Coil 341 361 - -
Bda07g01523 1150 MobiDBLite consensus disorder prediction 964 1037 - -
Bda07g01523 1150 Coils Coil 465 521 - -
Bda07g01523 1150 MobiDBLite consensus disorder prediction 987 1005 - -
Bda07g01523 1150 Coils Coil 116 143 - -
Bda07g01523 1150 Coils Coil 543 563 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01523 - - - qsu:112035734 947.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01523 Bda-Chr7:28311738 Bda12g00230 Bda-Chr12:2437565 4.63E-172 dispersed
Bda07g01523 Bda-Chr7:28311738 Bda07g01071 Bda-Chr7:12557940 9.56E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39