Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01543 ATGGGTTCAGTAAAGAGAAAATTTGTGGAAGAGTTGCTTGATGAACATAATCAGAAACACCAGAGAGAGAACGGCACTGTTATAGATTACAAAGAGCCCGTGGCATGCATTCATGATGTTTCACATCCAGAAGGTTACGTTTTTCCTCAGAAACCTGGTCCCTTTTCCGCTCAGGAGAAACCGGTGCCTGCAAAAGATTTTCCTTTCTCTCTTGACCCTTTTCAATCTAAAGCTATTGAGTGTTTGGAAAATGGTGAATCTGTTATGGTATCTGCCCATACCTCAGCTGGGAAGACTGTTGTTGCATTGTATGCTATTGCTATGTCTCTGCAAAATAAGCAACGTGTAATATACACGTCACCAATCAAGGCACTCAGCAACCAAAAATATAGGGAGTTTAAAGAGGAATTTTCTGATGTTGGTCTAATGACTGGTGATGTAACAATCGAGCCAAATGCATCTTGCTTGGTGATGACTACAGAAATCTGGCGTAGTATGCAGTACAAAGGATCAGAGATTATACGAGAAGTGGCTTGGGTAATATTTGATGAAGTTCATTATATGCGTGATCGGGAAAGAGGGGTTGTGTGGGAAGAAAGCATTGTCATGGCCCCAAAAAACTCTCGTTTTGTCTTTCTATCTGCAACTGTTCCTAATGCAAAAGAATTTGCTGATTGGGTTGCGAAGGTCCATCAGCAACCATGTCACATTGTATATACTGATTATAGGCCGACACCTCTTCAGCACTACATTTTCCCTTCGGGTGGAGATGGTCTATATTTGGTGGTGGATGAAAAGGGAAATTTTCGTGAGAATAGTTTTCAGAAAGCTTTAAACGCTCTTGTTCCAGCTAGTGATAGCGAGAAGAAAAGGGATAGCGGAAAGTGGCTTAAGAATTTAAATTTAGGCAAACTTGGTGAAGAAAGTGACATATTTAAGATGGTCAAAATGATAATTCAGCGTCAGTATGATCCTGTCATACTTTTCAGCTTTAGCAAAAGGGAATGTGAATTTCTTGCAATGCAGATGGCAAAAATGGATCTCAATGATGACGATGAAAAGGTCAATACAGAGACTATCTTTTGGAGTGCTATGGATATGCTTTCTGATGACGACAAGAAGCTACCTCAGGTCACCAATATGCTACCCCTCTTGAAGCGTGGAATAGGTGTTCATCATTCTGGCCTGCTTCCTATTTTGAAGGAGATTATTGAGATACTATTTCAGGAAGGCCTAATCAAGTGCTTGTTTGCTACAGAAACCTTCAGTATTGGTTTGAATATGCCTGCGAAAACTGTTGTCTTCACAAATGTTCGTAAATTTGATGGAGATAAATTCAGATGGTTATCAAGTGGAGAATACATACAGATGAGTGGTCGTGCTGGACGTCGAGGTATTGATAAACGTGGGATATGCATTCTTATGGTGGATGAGAAGTTAGAACCGTCAACTGCTAAAACGATGCTCAAGGGAAATGCAGACTGTTTGAACAGTGCATTTCATTTGAGCTATAACATGCTATTGAATCAAATGCGGTGCGAAGATGGTGATCCTGAAAATTTACTCCGCAATTCCTTCTTTCAGTTTCAAGCCGATCGTGCTGTCCCTGATCTTGAGAAACAAGCAAAGTGCCTTGAAGAAGAAAGGGATTCTATTATGATTGAAGATGAAGATAGTTTGAAGAATTATTACGATTTGCTGAATCAATACAAAAGTTTGAAGAAGGATATTCGTGAAATTGTGCTATCTCCTAAGTACTGCTTGCCATTTTTACAAGCTGGCAGACTGGTGTCTGTTGAATTGGCTGAGAATGATTCTTCCCCGTCTTTGTGTACTGAGGGCCAGATCACTTGGGGAGTGATAATTAATTTTCAAAGGTTGAACAATGGCTCTGAAGATGATGCAAATGTGAAACCAGAACATGCAAACTACACTGTAGATGTTCTCACAAAATGTGTTGCAGCTGATGATGCGTTTGGGAAAAGAACCATCAACGTTGTCCAACTGAAAGATCGAGGCGAACCTCTTGTTATTTCCATTCCTATCTCTCAGATCAGTAGTTTATCGAGTATTCGTGTCATTATACCAAAAAATCTTCTGCCCTTGGAAGCACGAGAAAGTACATTGAAAAAGATATCCGAAGTTGTTTCCAGATTTCCCAATGGAATCCCCCTCCTAGATCCAGAAGAAGATTTGAAGGTTCAAAGTAGTTCATATCGAAAGACATCTCGAAGAGTAGAGGCCTTAGAAAGCCTGTTTGAGAAACATGCAATTGCAAAATCTCCACTTATTGGGCAGAAGCTTAAAGCGTTTCATATGAAGCAGAACTTGACTGCCAAAATAAAGTCAATTCGAAAAACAATGCGCTCTTCCACTGCATTGGCTTTTAAAGATGAACTTAAAGCAAGAAAAAGAGTCCTTCGAAGACTCGGATATGTTACTCGTGATGATGTCGTCGAATTGAAAGGAAAGGTTGCTTGTGAAATCAGTAGTGCCGAGGAGTTGACTCTTACAGAGCTAATGTTCAATGGGGTTTTCAAGGACATAAGTGTAGAACAGTTGGTGTCTCTGCTCTCTTGTTTCGTGTGGCAAGAGAAACTAAAGGATTCTGCAAAGCCGAGGGAAGAACTCGAGCTTTTTTTTACGCAATTACAAGACACTGCTAGAAGAACTGCCAAGGTTCAGCTTGAGTGCAAGATTCAAATCGATGTGGAGAGCTTTGTGGGTTCATTTCGGCCGGATATTATGGAGGCTGTGTATGCTTGGGCGAAAGGATCCAAGTTCTACGAAATCATGGAAAGTAGTCAGGTATTCGAGGGAAGCCTTATCCGGGCAATTCGAAGGCTAGAGGAGGTTTTACAGCAGCTCATACTCGCAGCTAAGTCCATTGGGGAAACTGAGCTTGAATCCAAACTTGATGAAGCTGTTTCCAAGATCAAGAGAGATATTGTCTTTGCTGCATCTTTATATTTATAG 2976 40.69 MGSVKRKFVEELLDEHNQKHQRENGTVIDYKEPVACIHDVSHPEGYVFPQKPGPFSAQEKPVPAKDFPFSLDPFQSKAIECLENGESVMVSAHTSAGKTVVALYAIAMSLQNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIIREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGNFRENSFQKALNALVPASDSEKKRDSGKWLKNLNLGKLGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNDDDEKVNTETIFWSAMDMLSDDDKKLPQVTNMLPLLKRGIGVHHSGLLPILKEIIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKLEPSTAKTMLKGNADCLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFFQFQADRAVPDLEKQAKCLEEERDSIMIEDEDSLKNYYDLLNQYKSLKKDIREIVLSPKYCLPFLQAGRLVSVELAENDSSPSLCTEGQITWGVIINFQRLNNGSEDDANVKPEHANYTVDVLTKCVAADDAFGKRTINVVQLKDRGEPLVISIPISQISSLSSIRVIIPKNLLPLEARESTLKKISEVVSRFPNGIPLLDPEEDLKVQSSSYRKTSRRVEALESLFEKHAIAKSPLIGQKLKAFHMKQNLTAKIKSIRKTMRSSTALAFKDELKARKRVLRRLGYVTRDDVVELKGKVACEISSAEELTLTELMFNGVFKDISVEQLVSLLSCFVWQEKLKDSAKPREELELFFTQLQDTARRTAKVQLECKIQIDVESFVGSFRPDIMEAVYAWAKGSKFYEIMESSQVFEGSLIRAIRRLEEVLQQLILAAKSIGETELESKLDEAVSKIKRDIVFAASLYL 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28644873 28653109 - Bda028395.1 Bda07g01543 10433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01543 991 CDD DEXHc_Mtr4-like 36 243 - -
Bda07g01543 991 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 79 235 IPR014001 -
Bda07g01543 991 PANTHER EXOSOME RNA HELICASE MTR4 50 990 - -
Bda07g01543 991 SMART ultradead3 67 250 IPR014001 -
Bda07g01543 991 CDD SF2_C_Ski2 243 477 - -
Bda07g01543 991 SMART helicmild6 376 465 IPR001650 -
Bda07g01543 991 Pfam DEAD/DEAH box helicase 73 220 IPR011545 GO:0003676|GO:0005524
Bda07g01543 991 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 512 IPR001650 -
Bda07g01543 991 Pfam DSHCT (NUC185) domain 816 986 IPR012961 -
Bda07g01543 991 Gene3D - 38 243 IPR027417 -
Bda07g01543 991 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 50 990 - -
Bda07g01543 991 SMART DSHCT_2 814 991 IPR012961 -
Bda07g01543 991 Gene3D - 769 991 - -
Bda07g01543 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 479 IPR027417 -
Bda07g01543 991 Gene3D - 592 722 - -
Bda07g01543 991 PIRSF SKI2 4 991 IPR016438 GO:0003723|GO:0003724|GO:0006401
Bda07g01543 991 Pfam rRNA-processing arch domain 519 789 IPR025696 -
Bda07g01543 991 Coils Coil 535 555 - -
Bda07g01543 991 Pfam Helicase conserved C-terminal domain 380 465 IPR001650 -
Bda07g01543 991 Gene3D - 244 497 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01543 K12598 MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1 [EC:3.6.4.13] - csv:101203071 1588.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01543 Bda11g01247 CCT
Bda07g01543 Bda11g01247 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00561 Bda-Chr7:6946051 Bda07g01543 Bda-Chr7:28644873 2.29E-93 dispersed
Bda07g01543 Bda-Chr7:28644873 Bda11g00120 Bda-Chr11:1627347 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007010 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36