Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01576 TCTGGGCAACCACAAATGATGGGAGGAGGGACTACTCAGAAGCTAACAACCAATGATGCATTGGCATATCTGAAGGCAGTGAAGGACATATTTCAGGACAAAAAGGAAAAATATGAAGACTTTCTTGAAGTTATGAAAGATTTTAAGGCTCAAAGAATTGATACTGCGGGAGTCATTGGAAGAGTAAAGGAATTATTTAAAGGTCATCGTGACTTAATTTTGGGCTTCAATACTTTCTTGCCCAAAGGATATGAGATTACTCTTCCACTTGAGGATGAGCAACCTACTCATAAAAAACCCGTTGAATTTGAAGAGGCCATCAATTTTGTGAATAAGATTAAGACTCGGTTTCAAGGGGACGATCATGTTTACAAATCATTTCTGGACATTTTGAATATGTATAGAAAGGAAAACAAGTCAATCAGTGAGGTCTACCAGGAGGTTTCTGCACTTTTCCATGATCACAAAGACTTACTCTTTGAGTTCACTCATTTTCTACCTGAGTCATCAGCAGCAACCGCCACTCACTATACTCCTGGTAGAAATTCTATGCTACGTGATAGGAACTCTGCTATACCTACAATGCGGTCCATGCATGCTGACAAGAAAGTTGCTTCACATACTGACAGTCATATTAGCATTGACCGTCCTGATCCTGACCATGATAGAGCCTTGATGAAAGCAGAGAAAGAACACCGTAGGCGTGGTGAAAAAGAAAAGGATAGGAGGGAGGACAGAGATAGAAGAGAACGTGATAGGGAAAGAGAGGATAGGGATTACGAACATGATGGTAGCCGGGATATTAACATGCAACGGTTTTTGCATAAGAGGAAGTCTCGTAGGGTTGAAGACTCACTTGCTGAACCATTGCATCAAGGTGAAGAGGGTGATGAAAATTTTGGGCTGCGTCCAATGTCATCCTCCTATGATGATAAAACTTCTGCTAAGAGTATGTACTGCCAAGAGCTTGCTTTTTGTGAGAAAATGAAAGAGAAGTTGAGAAATGCTGATGACTACCAGGAATTTTTGAAGTGCCTCCATATCTACAGCAAGGAAATTATAACCCGAGATGAGCTGCAATCTTTGGTGGGTGATTTACTTGGAAGATATCCGGATTTGATGGATGGATTTAATGAATTTTTGACATGTTGTGAGAAGAATGATGGATTTCTTGCTGATGTCATGAGTAAAAAGACCTTGTGGAATGGAGGAAGTCTCTCAAGATCAGTGAAGATAGAAGATAGAGATAGAGACAGAGATCATGAGAGAGAAGATGGATATAAAGACCGAGAAAACCGAGAAAGGGATAGACCTGATAAAAGTGTTGCTTTTGGCAGCAAAGATGCTGGAGGTCACAAGATGTCTTTATTTCCTTGTAAAGACAAGTATTTGTCAAAGCCTATTAATGAACTTGACCTCTCTAATTGTGAACGCTGCACTCCTAGTTATCGTCTTCTGCCCAAAAATTATCCTATCCCTACAGCTAGCCAAAGATCAGAGCTTGGGGATCAAGTATTGAATGATCATTGGGTATCTGTTACTTCAGGGAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAAAGCCTGTTTCGATGTGAAGATGATAGGTTTGAACTGGACATGTTGTTAGAGTCTGTGAATGTCACTACCAAGCGCGCTGAAGAATTGTTGGAGAAGATAAACAACAACACAATTAAAACTGACAGTCCAATCCGTATTGAGGACCACTTCACTGCTCTGAATTTAAGGTGCATTGAGAGATTATATGGTGACCATGGACTTGATGTCATGGATGTGCTGAAGAAGAATTCACCCCTTGCTTTGCCGGTTATATTGACCCGCTTGAAGCAGAAACAAGAAGAGTGGGCACGGTGCCGTACAGATTTTAATAAAGTATGGGCAGATATATATGCAAAGAACTATCACAAATCACTTGATCACCGCAGCTTCTACTTTAAGCAGCAGGATACAAAAAGCTTAAGCACAAAAGGGCTATTGGCAGAGATCAAAGAAATAAGTGAGAAGAAGCGTAAGGAAGATGATGTATTGCTTGCTATTGCTGCCAGAAATAGAAGACCAATCAGTCCAAATTTGGAATTTGAGTATCCTGATCCAGCCATTCATGATGATATTTATCATCTTATGAAGTTTTCATGTGGAGAAGTTTGCAGTACTGAAATGTTGGGTAAGATAATGAAGATTTGGACAACCTTTCTTGAACCTATGTATGGTGTCCCCCCTCGTCCTCTCGTTGCTGAGGACACTGAAGATGTCGTCAAGGCAAAAGATCATGTTTCAAAAGGTAGTGCACTAAGTGCAGTAGAGAGTGATGGCAGTCCTGGTGGCGCTGCCATTATCATGAATTTGAAGCAGATAAGTTCTTCCCGAAACGAAGATGAAATTATTCCACTAGAACAATCAAGTTCTTACAGGACTTGGCCTGTGAATGGGGATAATGGTGTTAAAGAGGATGGTTTTCATGAGGTGGATCGCACTGCTCGGAAAAGTGATGCTTTCTCCATTCCTATGCATTCTAAAATGCAGCCGAATGTATCGGCAGCTGATGAATTGTCTGGAGTTGGCAAGCAAGATAATTCTAAAGAACGTTTAGTCAATTCAAAAGCTTCACTTGCTGCTGGAGGGGAGCAAAGTAATGGGAAAACTAACCTAGAAAACACATCAGGATTAAATAATACTCTTTCCAGACCAGGAAATTGTGCTTTGGATAGTGGTCTTGAGTTGCCTGCTTCAGAGGACGGTGATTCAACAAAACCTTTAATATCTTCTAATGGAGTGACAACTGAAGGTATGAAAAATCACGGGTATATGGAAGAGGCTGTTGGACACTTTAAAGTAGAAAGGGAAGAAGGTGAATTGTCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAAGTTATGGAGAAGCTGGTTTAGAAGTAGTCCATGAAGAAAAGGATGGTGCTAGGCAGTATCCAAATGTACCTGGAGAGGAAGAAGTCTGTTGCAGGGAGGCTGGTGGAGCAAATGATGCAGACGCTGATGACGAAGGTGAGGAAAGTGCTCAGAGGTCATCAGAGGATAGTGACAATGCTTTTGAGAATGGTGATGTTTCTGTAAGTGAATCTGGAGATGGTGAAGATTGTTCTCATGAAGATCATGAGGAAGACGGGGACCATGATGAACATGATCATAAGGCTGAGAGTGAAGGCGAGGCTGAAGGGATGGCTGATGCTCATGATATTGAAGGAGACGGAACATCTTTACCATTTTCAGAACGATTTTTACTTACGGTTAAACCCCTCGCTAAATTTGCCCCACCTGCACTTCATGGAAAAGAAAAGGCGTTACATGTTTATTATGGGAATGACTCTATCTATGTGCTTTTCAGGCTTCACCAGACACTGTATGAGAGGCTACTATCAGCTAAGACAAATTCGTCATCAGCTGAGAGGAAGTGGAGGGCTTCAAGCGATGCAGCTTCTACCAATCTTTACGCCAGGTTCATGGTTGCACTTTACACTTTACTTGAAGGTTCCTCCGATAATACCAAATATGAGGACGATTGTCGAGCTGTTGTTGGAACCCAATCATATGTTCTATTCACATTAGATAAGCTGATATATAAAATTGTTAAACAGGTTCAAGCTATTGCCGCCGATGAGATGGATAACAAGCTTCTTCAACTTTATGCTTATGAAAAGTCGAGAAAACCTGGAAGATTTATTGATTTAGTTTATCATGAAAATGCTCGTGTCCTTCTGCACGATGAGAACATTTATCGGATTGAATGTTCATCCTCTCCGACTCGTATATCTATTCAGCTTATGGACTATGGTCATGATAAGCCTGAAGTGACCGCTGTGTCAATGGACCCTAATTTTTCATCTTATCTGCACAATGACTTTCTATCTGTACTTCCCGACAAAAAAGGGAAGTCTGGGATCTTCTTGAAGAGAAACAAACGTAAATATTCTTCAAATGATGATATTCTTTCTACATCCCTGGCCATCGAAGAAGTTAAAGTTGTCAATGGTCTGGAGTGTAAGATAGCTTGTAATTCATCAAAGGTCTCGTACGTTTTAGATACAGAAGACTTTCTGTTTCGTAGTAAAAGCAAACGAAAAAGATGGACGACAAACGGTGAAAGCCAAGACCGGTTGTCTTCAAGTGGTTGTACTTCAACATCAAGTAGACTACAACGGTTTCACAGATTGCTTGGGAGCTCA 4242 40.78 SGQPQMMGGGTTQKLTTNDALAYLKAVKDIFQDKKEKYEDFLEVMKDFKAQRIDTAGVIGRVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPTHKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVSALFHDHKDLLFEFTHFLPESSAATATHYTPGRNSMLRDRNSAIPTMRSMHADKKVASHTDSHISIDRPDPDHDRALMKAEKEHRRRGEKEKDRREDRDRRERDREREDRDYEHDGSRDINMQRFLHKRKSRRVEDSLAEPLHQGEEGDENFGLRPMSSSYDDKTSAKSMYCQELAFCEKMKEKLRNADDYQEFLKCLHIYSKEIITRDELQSLVGDLLGRYPDLMDGFNEFLTCCEKNDGFLADVMSKKTLWNGGSLSRSVKIEDRDRDRDHEREDGYKDRENRERDRPDKSVAFGSKDAGGHKMSLFPCKDKYLSKPINELDLSNCERCTPSYRLLPKNYPIPTASQRSELGDQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRAEELLEKINNNTIKTDSPIRIEDHFTALNLRCIERLYGDHGLDVMDVLKKNSPLALPVILTRLKQKQEEWARCRTDFNKVWADIYAKNYHKSLDHRSFYFKQQDTKSLSTKGLLAEIKEISEKKRKEDDVLLAIAARNRRPISPNLEFEYPDPAIHDDIYHLMKFSCGEVCSTEMLGKIMKIWTTFLEPMYGVPPRPLVAEDTEDVVKAKDHVSKGSALSAVESDGSPGGAAIIMNLKQISSSRNEDEIIPLEQSSSYRTWPVNGDNGVKEDGFHEVDRTARKSDAFSIPMHSKMQPNVSAADELSGVGKQDNSKERLVNSKASLAAGGEQSNGKTNLENTSGLNNTLSRPGNCALDSGLELPASEDGDSTKPLISSNGVTTEGMKNHGYMEEAVGHFKVEREEGELSPNGDFEEDNFASYGEAGLEVVHEEKDGARQYPNVPGEEEVCCREAGGANDADADDEGEESAQRSSEDSDNAFENGDVSVSESGDGEDCSHEDHEEDGDHDEHDHKAESEGEAEGMADAHDIEGDGTSLPFSERFLLTVKPLAKFAPPALHGKEKALHVYYGNDSIYVLFRLHQTLYERLLSAKTNSSSAERKWRASSDAASTNLYARFMVALYTLLEGSSDNTKYEDDCRAVVGTQSYVLFTLDKLIYKIVKQVQAIAADEMDNKLLQLYAYEKSRKPGRFIDLVYHENARVLLHDENIYRIECSSSPTRISIQLMDYGHDKPEVTAVSMDPNFSSYLHNDFLSVLPDKKGKSGIFLKRNKRKYSSNDDILSTSLAIEEVKVVNGLECKIACNSSKVSYVLDTEDFLFRSKSKRKRWTTNGESQDRLSSSGCTSTSSRLQRFHRLLGSS 1414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29203387 29211953 - Bda033978 Bda07g01576 10466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01576 1414 MobiDBLite consensus disorder prediction 1012 1079 - -
Bda07g01576 1414 SUPERFAMILY PAH2 domain 318 383 IPR036600 GO:0006355
Bda07g01576 1414 Coils Coil 548 568 - -
Bda07g01576 1414 MobiDBLite consensus disorder prediction 842 943 - -
Bda07g01576 1414 MobiDBLite consensus disorder prediction 200 298 - -
Bda07g01576 1414 MobiDBLite consensus disorder prediction 412 443 - -
Bda07g01576 1414 MobiDBLite consensus disorder prediction 1060 1079 - -
Bda07g01576 1414 Gene3D Paired amphipathic helix 313 386 IPR036600 GO:0006355
Bda07g01576 1414 SUPERFAMILY PAH2 domain 97 167 IPR036600 GO:0006355
Bda07g01576 1414 Pfam C-terminal domain of Sin3a protein 1124 1372 IPR031693 -
Bda07g01576 1414 Pfam Sin3 family co-repressor 477 569 IPR013194 -
Bda07g01576 1414 ProSiteProfiles PAH domain profile. 99 169 IPR003822 GO:0006355
Bda07g01576 1414 SMART hdac_interact2seq4b 475 575 IPR013194 -
Bda07g01576 1414 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 11 1388 - -
Bda07g01576 1414 SUPERFAMILY PAH2 domain 11 82 IPR036600 GO:0006355
Bda07g01576 1414 MobiDBLite consensus disorder prediction 927 941 - -
Bda07g01576 1414 ProSiteProfiles PAH domain profile. 303 384 IPR003822 GO:0006355
Bda07g01576 1414 MobiDBLite consensus disorder prediction 882 910 - -
Bda07g01576 1414 MobiDBLite consensus disorder prediction 199 311 - -
Bda07g01576 1414 MobiDBLite consensus disorder prediction 412 445 - -
Bda07g01576 1414 Pfam Paired amphipathic helix repeat 337 381 IPR003822 GO:0006355
Bda07g01576 1414 Pfam Paired amphipathic helix repeat 36 80 IPR003822 GO:0006355
Bda07g01576 1414 Pfam Paired amphipathic helix repeat 122 166 IPR003822 GO:0006355
Bda07g01576 1414 Gene3D Paired amphipathic helix 97 170 IPR036600 GO:0006355
Bda07g01576 1414 ProSiteProfiles PAH domain profile. 13 83 IPR003822 GO:0006355
Bda07g01576 1414 PANTHER SIN3B-RELATED 11 1388 IPR039774 GO:0003714
Bda07g01576 1414 Gene3D Paired amphipathic helix 19 81 IPR036600 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01576 K11644 SIN3A; paired amphipathic helix protein Sin3a - mnt:21394293 2153.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01576 Bda11g01246 CCT
Bda07g01576 Bda11g01246 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02241 Bda-Chr1:58229442 Bda07g01576 Bda-Chr7:29203387 1.34E-23 dispersed
Bda07g01576 Bda-Chr7:29203387 Bda11g01246 Bda-Chr11:12990587 0 dispersed
Bda10g01002 Bda-Chr10:44210161 Bda07g01576 Bda-Chr7:29203387 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003861 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16195 PF16879 Sin3a_C 8.90E-59 No_clan Bda TR