Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01592 ATGCTCATGAAGGCTATTACGGTTGATGCTCAAGCAGTACAGAGGCATCGAACAACGATATTGGAATGTGTAAAGGATTCAGATGCTTCAATTCGTAAAAGGGCCCTTGAGCTTGTTTATCTTTTAGTGAACGACAGTAATGTAAAGTCTCTTACCAAAGAATTGATTGAATATCTTGAAGTAGCCGATGAAGAATTTAAGGGAGATCTTACGTCAAAAATTTGCACAATTGTTGCAAAGTTTTCCACGGAGAAGATTTGGTACATTGATCAAATGCTTAAGGTTCTTTCCAAGGCTGGAAATTTTGTTGAAGACGAGGTTTGGCATGCACTTATTGTCATGATAAGCAATGCTACTGACCTCCATGGATACACTGTAAGAGCATTATACAGAGTGTTCCAATCATCTATTGAACAGGAAAGTCTTGTTCGAGTGGCTGTTTGGTGCATTGGGGAATATGGTGACATGTTGGTTAATAATGTTAAGATGCTAGACACAGAGGATCCTATGACAGTGACCGAGTCTGACATCGTGGATGTCATAGAGACTGCTATTAAGCGCCAGACTTCTGATCTTACCACTCAATCAATGGCATTGGTTGCCCTGTTGAAGCTTTCTTCTCGTTTTCCTTCTATATCCGGGACGATCAAAGATATAATTGTCCAATTCAAAGGAAGCTTAGTTCTTGAATTGCAGCAAAGATCTATTGAATTCAACTCAATCACTTCAAGGCATCAAAATATCAGGTCCACGTTAGTTGAAAGAATGCCAGTTCTGGACGAAGCAACATTTCTAGGAAGGAAGGCAGGGGCAATGCCTACAACTGTTTCAACTCCGAACGGGGCATCCATTAATCTTCCAAATGGAGTTGCTAAAACTACTGCAGCTCCACTGGTAGATTTACTTGATTTGAGTTTAGATGATGCTCCCGTGACTAGCTCTTCTGGCGGTGATTTCCTCCAGGATCTTCTCGGTATTGATTTATCACCGGCTCCGAATCAGTCTGGTGCAAAAGACTCGCAGAGAACTGGTACAGATGTTCTGCTGGATCTTTTGTCTATCGGAACACCTTCAACCCTATCATCAAATGATATATCAGCCAAATCAGAGAACAAAACACCTATTGCATTAGATGGGCTCTCGTCTCTCTCGACACTTCCCACACGGGCCACTTCTGCTATGGATTTGTTAGACGGCTTTGCACATAACCCAACTTCTGAAGACGACGGTCCACAATACCCATCTGTTGTTGCATACGAGAGCAGCTCCTTGAGAATGACTTTTAACTTCTCTAAATTGCCTGGCAGTCCACAAACAACGTTAATCTATGCCACTTTTAATAATTTATCTCCAAATGCCTATTCGAATTTTATTTTTCAAGCCGCAGTTCCAAAGTTTCTTCAACTGCAGCTAGACCCAGCCAGCGGTAATACTCTCCCTGGAAGTGGCAATGATTCCATTACTCAAACTTTGAGAGTGACTAACAACCAACATGGAAAGAAGTCTCTTGTCATGCGCATAAGGATAGCTTACAAGCTGAACGACAAAGATGTTTTGGAGGAAGGACAAGTCAACAATTTTCCTCGCGGCTTA 1593 41.81 MLMKAITVDAQAVQRHRTTILECVKDSDASIRKRALELVYLLVNDSNVKSLTKELIEYLEVADEEFKGDLTSKICTIVAKFSTEKIWYIDQMLKVLSKAGNFVEDEVWHALIVMISNATDLHGYTVRALYRVFQSSIEQESLVRVAVWCIGEYGDMLVNNVKMLDTEDPMTVTESDIVDVIETAIKRQTSDLTTQSMALVALLKLSSRFPSISGTIKDIIVQFKGSLVLELQQRSIEFNSITSRHQNIRSTLVERMPVLDEATFLGRKAGAMPTTVSTPNGASINLPNGVAKTTAAPLVDLLDLSLDDAPVTSSSGGDFLQDLLGIDLSPAPNQSGAKDSQRTGTDVLLDLLSIGTPSTLSSNDISAKSENKTPIALDGLSSLSTLPTRATSAMDLLDGFAHNPTSEDDGPQYPSVVAYESSSLRMTFNFSKLPGSPQTTLIYATFNNLSPNAYSNFIFQAAVPKFLQLQLDPASGNTLPGSGNDSITQTLRVTNNQHGKKSLVMRIRIAYKLNDKDVLEEGQVNNFPRGL 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29543658 29557480 - Bda033980 Bda07g01592 10482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01592 531 Gene3D - 1 260 IPR011989 -
Bda07g01592 531 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 1 530 - -
Bda07g01592 531 Pfam Adaptin N terminal region 2 244 IPR002553 GO:0006886|GO:0016192|GO:0030117
Bda07g01592 531 SUPERFAMILY ARM repeat 2 259 IPR016024 -
Bda07g01592 531 Pfam Adaptin C-terminal domain 414 528 IPR008152 GO:0006886|GO:0016192
Bda07g01592 531 Gene3D - 400 529 - -
Bda07g01592 531 SMART alpha_adaptinc2 408 528 IPR008152 GO:0006886|GO:0016192
Bda07g01592 531 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 411 528 IPR008153 -
Bda07g01592 531 SUPERFAMILY Clathrin adaptor appendage domain 391 530 IPR013041 -
Bda07g01592 531 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 1 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01592 K12391 AP1G1; AP-1 complex subunit gamma-1 - qsu:112015360 787.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01592 Bda-Chr7:29543658 Bda09g01426 Bda-Chr9:46080730 6.22E-28 dispersed
Bda10g01015 Bda-Chr10:44316700 Bda07g01592 Bda-Chr7:29543658 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41