Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01594 GATTGTATTTCCTCTGTTATTCCTGGATGGTTCTCGGAGATTAGCCCAATGTGGCCTGGGGAGGCGCACTCCTTGAAGGTCGAGAAGATTTTATTTCGTGGGAAATCGGATTATCAGAATGTAATTGTTTTCCAGTCAGCGACTTATGGAAAGGTTCTCGTGCTGGATGGGGTGATTCAACTTACAGAGAGAGATGAATGTGCTTACCAAGAGATGATCACCCATCTTCCACTTTGCTCAATTCCAAACCCGAGAAAGGTTTTGGTTATTGGCGGTGGAGATGGTGGAGTCTTACGGGAAGTGTCTCGTCACTCGTCCATCGAACAAATTGATATATGTGAAATTGACAAGATGGTCATTGACGTCTCCAAACAGTATTTCCCAGACGTAGCTGTTGGGTACGAAGATCCTCGAGTGAAACTTTTCGTTGGCGATGGAGTTGCATTTCTGAAGGCCGTTCCTGAAGGGACGTACGATGCAATCATAGTCGATTCTTCCGATCCAATAGGACCTGCACAAGAGCTTTTTGAGAAGCCATTTTTCAAGTCGGTGGCGAAGGCACTTCGTCCGGGAGGTGTTGTGTGTACTCAGGCAGAGAGTATATGGCTTCATATGCACATTATCGAAGACATTGTTGTAAACTGCCGCCAAATATTCAAAGGCTCGGTTAATTACGCATGGACGACAGTTCCCACTTATCCGAGCGGGGTGATCGGTTTTATGCTGTGCTCTACCGAAGGACCCTCGGTGGATTTCAAGCATCCGGTGAGCTCGATAGACACCGATGATAGCTTTAACAAATCGAAAGGACCCTTAAAATTTTACAACTCTGAGATTCACTCGGCAGCTTTCTGTTTGCCATCATTTGCCAAGAAAGTCATTGATTCGAAA 891 45.68 DCISSVIPGWFSEISPMWPGEAHSLKVEKILFRGKSDYQNVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPRKVLVIGGGDGGVLREVSRHSSIEQIDICEIDKMVIDVSKQYFPDVAVGYEDPRVKLFVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFKSVAKALRPGGVVCTQAESIWLHMHIIEDIVVNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPSVDFKHPVSSIDTDDSFNKSKGPLKFYNSEIHSAAFCLPSFAKKVIDSK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29583406 29585811 - Bda033981 Bda07g01594 10484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01594 297 Gene3D Spermidine synthase, tetramerisation domain 1 60 IPR037163 -
Bda07g01594 297 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 297 IPR001045 GO:0003824
Bda07g01594 297 PANTHER SPERMIDINE/SPERMINE SYNTHASE-RELATED 3 297 - -
Bda07g01594 297 TIGRFAM speE: spermidine synthase 10 289 IPR001045 GO:0003824
Bda07g01594 297 Pfam Spermine/spermidine synthase domain 66 253 - -
Bda07g01594 297 PIRSF Spermidine_synth 1 297 IPR030668 GO:0006595
Bda07g01594 297 Hamap Polyamine aminopropyltransferase [speE]. 9 295 IPR001045 GO:0003824
Bda07g01594 297 CDD AdoMet_MTases 86 197 - -
Bda07g01594 297 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 6 295 IPR029063 -
Bda07g01594 297 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 8 245 IPR030374 -
Bda07g01594 297 Pfam Spermidine synthase tetramerisation domain 9 63 IPR035246 -
Bda07g01594 297 Gene3D Vaccinia Virus protein VP39 61 297 IPR029063 -
Bda07g01594 297 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 87 100 IPR030373 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01594 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csin:114320283 564.688
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02226 Bda07g01594 CCT
Bda01g02226 Bda07g01594 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02226 Bda-Chr1:58082203 Bda07g01594 Bda-Chr7:29583406 9.45E-160 dispersed
Bda06g00587 Bda-Chr6:8115044 Bda07g01594 Bda-Chr7:29583406 5.16E-112 dispersed
Bda06g00781 Bda-Chr6:10866933 Bda07g01594 Bda-Chr7:29583406 1.60E-151 dispersed
Bda13g00130 Bda-Chr13:1694281 Bda07g01594 Bda-Chr7:29583406 1.50E-32 transposed
Bda01g01344 Bda-Chr1:49151506 Bda07g01594 Bda-Chr7:29583406 7.98E-36 transposed
Bda10g01018 Bda-Chr10:44342228 Bda07g01594 Bda-Chr7:29583406 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106