Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01597 ATGGCGGACTCTCCGTCTGCTGCCACTGAATCCAATTCTCAACCTCAACAACCTGAGAATCGGGTTTCGGATATGAATCAAACCGATTCGGTTCCCTCGCAACTACAATCTTCTGGTTCGGCGTCTATTCCTGTTGCAGCTAATCCTAACTTGAATCCTCCTCTGATATCTCCTCCTCAGCCTCCTCTGTCCTTTGCCCCTCCTCCGGCAGCACCGTCGTTTCGGCCTTTACCTCTTTCTACTCCGCAGTTTCCACCCATTCTCAACCCTGGCTTTCCGAACGTGAACTATGTGAATCCTGGCATTCAACCGCCTGGTGTCAGTTCTGCGGCTCCTGGTTTGATAAGTGGCTCAGTTTCTGCTCCTCAGCAGATGATGCCTTATCAGGTTTTCCCTGGACAGGCTCCTAATCCGGCTATGAGACCCTATGCACCTATTCCAAATGGTTATGCTACGATCCCGGCTGCAGTTCCTCAAGGAACTTTACCTCTCGCAGGAGTTCCTCGTTTTACTTCTCCGTATGCATCTGTGGTGCGGGGTCCATTTCCTCCTCGGCCACCTGGAGCCATTGGTATCATTCCAACGGTGTCACGTCCTCTTCTTCCAGGTGTACCTGGCATTCGCCCTATGATGCCTTTGGTGATGAGGCCTGTCATTCCTCCAAGTGTTACCCCCGCTGAGTTACCACAAACCACAATTTATATTGGCCGAATAGCTCAAACTGTGGAAAATGATTTCATGTTATCTCTTCTTCAGTTATGTGGACCTGTGAAGAGTTGGAAACGTGTCCAAGACCCTACAAATGGGACTCCTAGAGCATTCGGCTTTTGTGAGTTTGAGTCTGCCGAAGGTGTACTTCGTGCTATACGACTGCTTACCAATTTTAATGTAGATGGGCAAGAACTAAAGTTAAAAGGTACCCAAGCAACCAGAAAATATCTACGTCAGTATGTCGAAAAGAAAATAGAAAACTCAAAAAAGCTGAAAGAAACTCAGGATGGAGAAGCAAAAGAAGAGGACAGAAGTGCAGTAGTTGCGGAGAAGAGTGATACTGTCAAATCTGTTGTAGAGGACTCAAAAGTAGATAATGATCCGGGGGAGAAAGAAGATCGTGAGATTGCCATTTCTGCAATTGTATCTAATGAGGACAAGGAAGCTGATCAAGAGGCTTTGCAAAAGCTTACAAGCTCAATAGAGGCGAGGCTGAAGACCAGACCACTGCCTCAGCCCCCTGCTCAAGCGGTTGATGATCCCTCTGGTAATGCAGATCCTTCTGCCAAGATGAGAGATGGAGACTCAGATGGTGATGTGACAAGAAGTGATGCTGTTGATGATAAAAATGATGCGGAAGACATCAAACAAACAAGTGATCATGACAGGCCCGAGACAAGCTCTCCTGAAAGAAGTAGAAGGTATGATAGGAGAAACAAAGAAAGAGACGTAAAAAGGGAAAAGGAGCGAGAGATTGAGAGATATGAGAGAGAAACAGAGCGAGAACGTATTAGGAAAGAGAGAGAGCAAAGAAGAAAGGTTGAGGAAGCTGAGCGTCAATATGAGGAATGCCTTAAAGAGTGGGAATATAGGGAAAGGGAAAAGGAGAAACAGAGGCAGTATGAAAGGGATAGGGAAAAAGAAAGGGAACGCAAAAGGAAGAAGGAGATAATATATGATGAAGACGACGATGATGACGATTCGAGAAAAAAGTGGCGCAGGAGTGTGTTGGAGGAAAAGAGGAAAAAGAAGCTTAGGGAAAAAGAAGACGATTTGGCCGACAGACAAAAAGAAGAGGAAGAAATTGCAGAGGCAATGAGAAGAGCTGATGAAGAACAAAAGCAGAAACAACAAAGAGAAGCTTTAAAACTGCTGTCTGTGAAAGTTGAGCATGATGATGTTAAAACTGTTCTTGCAGAAGAGTCTTCAGTAGAAATCAAAGTTGAGGTTGTTGATCAGCACTTTGAAGGCGACGCAGTTTGTGAGAACCACATCGGTATTAATGATATTTTCTTGGAATTATTTGGGCGTTATTATTTGACTCTCTTTTCTTTTGAATATTCAAAATGCCATATGATTGTATACAACAATGATGGAGTTTTACGCAATGGTGTAGGTTTTGAATCAACCTTGGTATCAGGTACTGCATCAGATCAACAGCATAGTGGTAATGGGCCTACAAGAAGGTTGGGATTTGGACTAGTTGGATCAGGAAAGCGAACTGCTGTACCATCTGTTTTCCATGAAGAAGATGATGATGAAGCACATAAGGAGAAAAAGATGAGGCCCCTCGTACCAATAGATTACTCAGCAGAGGAACTGGAGGCAGTTCAACCTCCCACTAGTGGAGTACAACCGCCAAACTTGGCTGCAGCAGCCGAGTTTGCAAAACGTTTATCGAATGCTAATACCAAGGAAGAAAAGTCAAATGAAAAGGAAAGAGGCAGGCGATCCAGTGATAAGGCCAGCCATCGGGACAAAGACCGAAATGATGAGGAAGTCCATCGAAAGAAAGATGAGAACAGGTCTTTTGATAGAGAGAGGGATCGTGATCGTGTGTTCGATAAATTGAAGACACCTGATAACAAGAAACTTTTAGATGCCAAGCAATTAATTGATATGATCCCAAAGACTAAGGAAGAGCTGTTCTCATACGAAATAAATTGGGCCATTTATGACAAGCACGAACTGCAGGAGCGAATGAGACCTTGGATATCGAAAAAGATAACCGAGTTTTTGGGGGAGGAAGAAGCAACACTGGTCGATTACATTGTTTCGAGCACTCAGGAACACGTGAAGGCATCACAAATGCTGGAGCTGCTTCAATCAATTTTGGACGAAGAAGCCGAAATGTTTGTTCTGAAGATGTGGAGGATGCTCATCTTTGAAATAAAGAAGGTGGAGACAGGTATAGCTTCAAGATCAAAAGTATGA 2925 44.24 MADSPSAATESNSQPQQPENRVSDMNQTDSVPSQLQSSGSASIPVAANPNLNPPLISPPQPPLSFAPPPAAPSFRPLPLSTPQFPPILNPGFPNVNYVNPGIQPPGVSSAAPGLISGSVSAPQQMMPYQVFPGQAPNPAMRPYAPIPNGYATIPAAVPQGTLPLAGVPRFTSPYASVVRGPFPPRPPGAIGIIPTVSRPLLPGVPGIRPMMPLVMRPVIPPSVTPAELPQTTIYIGRIAQTVENDFMLSLLQLCGPVKSWKRVQDPTNGTPRAFGFCEFESAEGVLRAIRLLTNFNVDGQELKLKGTQATRKYLRQYVEKKIENSKKLKETQDGEAKEEDRSAVVAEKSDTVKSVVEDSKVDNDPGEKEDREIAISAIVSNEDKEADQEALQKLTSSIEARLKTRPLPQPPAQAVDDPSGNADPSAKMRDGDSDGDVTRSDAVDDKNDAEDIKQTSDHDRPETSSPERSRRYDRRNKERDVKREKEREIERYERETERERIRKEREQRRKVEEAERQYEECLKEWEYREREKEKQRQYERDREKERERKRKKEIIYDEDDDDDDSRKKWRRSVLEEKRKKKLREKEDDLADRQKEEEEIAEAMRRADEEQKQKQQREALKLLSVKVEHDDVKTVLAEESSVEIKVEVVDQHFEGDAVCENHIGINDIFLELFGRYYLTLFSFEYSKCHMIVYNNDGVLRNGVGFESTLVSGTASDQQHSGNGPTRRLGFGLVGSGKRTAVPSVFHEEDDDEAHKEKKMRPLVPIDYSAEELEAVQPPTSGVQPPNLAAAAEFAKRLSNANTKEEKSNEKERGRRSSDKASHRDKDRNDEEVHRKKDENRSFDRERDRDRVFDKLKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAIYDKHELQERMRPWISKKITEFLGEEEATLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGIASRSKV 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29650420 29655758 + Bda028466.3 Bda07g01597 10487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01597 974 ProSiteProfiles PWI domain profile. 877 974 IPR002483 GO:0006397
Bda07g01597 974 Gene3D PWI domain 854 970 - -
Bda07g01597 974 MobiDBLite consensus disorder prediction 51 69 - -
Bda07g01597 974 MobiDBLite consensus disorder prediction 1 47 - -
Bda07g01597 974 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Bda07g01597 974 CDD RRM_RBM25 231 314 IPR034268 -
Bda07g01597 974 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 12 973 - -
Bda07g01597 974 MobiDBLite consensus disorder prediction 400 516 - -
Bda07g01597 974 SUPERFAMILY RNA-binding domain, RBD 225 304 IPR035979 GO:0003676
Bda07g01597 974 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 12 973 - -
Bda07g01597 974 SUPERFAMILY PWI domain 896 963 IPR036483 GO:0006397
Bda07g01597 974 MobiDBLite consensus disorder prediction 327 372 - -
Bda07g01597 974 SMART pwi_2 890 963 IPR002483 GO:0006397
Bda07g01597 974 Pfam PWI domain 897 960 IPR002483 GO:0006397
Bda07g01597 974 MobiDBLite consensus disorder prediction 528 567 - -
Bda07g01597 974 Coils Coil 528 548 - -
Bda07g01597 974 Coils Coil 475 524 - -
Bda07g01597 974 MobiDBLite consensus disorder prediction 1 69 - -
Bda07g01597 974 Gene3D - 226 343 IPR012677 -
Bda07g01597 974 SMART rrm1_1 232 305 IPR000504 GO:0003723
Bda07g01597 974 MobiDBLite consensus disorder prediction 427 516 - -
Bda07g01597 974 MobiDBLite consensus disorder prediction 796 845 - -
Bda07g01597 974 MobiDBLite consensus disorder prediction 797 845 - -
Bda07g01597 974 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Bda07g01597 974 Coils Coil 579 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01597 K12822 RBM25, S164; RNA-binding protein 25 - zju:107428625 957.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01597 Bda-Chr7:29650420 Bda01g01470 Bda-Chr1:50630241 6.68E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47