Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01599 ATGGATCTTCTTCAGAAATACTCGGACCTCAACGATGAAGTGGAGAATCAAAGCCCTAAATCCATTTCGTCTTCGCCCGGAGCTTCTCCTCCTCGCCTTCTTCCTTCCAAATCGGCGGCCCCGACCGTTGACGACACCATCCTAGCTCTTGCGGTGGCCAGCGCCAACCAGACTTTGTCTAAACCAATCGACCCGATTCAGCGCGCTATTGCTTTCAATCCTACCTACGATCAGCTATGGGCGCCTATCTACGGTCCTTCCCACCCCTATGCGAAGGATGGAATTGCACAGGGGATGCGGAATCACAAGCTAGGTTTCGTTGAGAACGCTTCCATTGAGTCGTTTGTTTTTGATGAGCAGTACAATACTTTCCACAAGTACGGCTACGCTGCTGACCCTTCGGCTTCCGCCGGATACAATTATGTCGGGGACATGGACGCTCTGCAGAAGAATGATGCAATTTCTGTGTATAACATACCTCAACACGAGCAAAAGAAGCGGAAGATAGAGAAAAAGAAGGAGCTGAATGAGGATGAGGATGAGGATGAAAAAGTTGATATGGAGTCTACTGAGGTTGATAATCCGGCTAGCGAAGCCTGGTTGAAGAGGAATAGGAAGAGTCCATGGTCAGGAAAGAAGGAAGGCCTGCAAACGGAGCTCACTGAGGAGCAGAAGAAGTATGCTGAAGAGCACGCGAAGAAGAAAGGAGAAGAGAAAGGAGGAGAGAAGACCGAGGTTATAGCTGATAAGAGTACGTTTCATGGTAAAGAAGAGAGGGATTATCAGGGTAGGTCTTGGATTGCACCGCCAAAGGATGCAAAAGCTTCAAACGACCATTGTTACATACCAAAAAGATTGGTGCACACTTGGAGCGGGCACACAAAGGGCGTGTCTGCTATTCGGTTTTTCCCTAAACATGGACACTTAATTTTATCTGCTGGGATGGATACTAAGGTGAAGATTTGGGACGTGTTCAATTCTGGGAAATGTATGAGAACCTATATGGGTCATTCACAGGCAGTTCGAGATATTTCATTCTGTAACGATGGGACCAAGTTCTTAACTGCTGGTTATGATAAGAAGATAAAGTACTGGGATACAGAAACTGGCCAAGTGATATCAACTTTCTCGACTGGAAAGGTTCCTTATGTGGTTAAGCTTAATCCTGACGATGATAAACAGAACATTCTACTGGCTGGGATGAGTGATAAGAAGATTGTACAATGGGATATGAATACTGGGCAAATTACTCAAGAGTATGATCAACATTTGGGGGCAGTGAATACCATTACTTTTGTCGATAATAACAGGAGATTTGTTACCTCGAGCGATGATAAATCACTTCGTGTGTGGGAATTTGGAATTCCAGTTGTTATCAAGTATATTAGTGAGCCTCACATGCATTCAATGCCTTCGATCGCTTTACATCCCAATACAAATTGGCTTGCTGCTCAGAGTTTAGACAATCAAATCCTTATATATGGCACTAGGGAGAGGTTTCAGTTAAATAAGAAAAAGAGATTTGCTGGTCATATTGCTGCAGGGTATGCATGTCAGGTTAATTTCTCACCTGACGGTCGATTTGTAATGTCGGGTGATGGTGAAGGAAGGTGCTGGTTTTGGGACTGGAAGAGTTGTAAAGTTTTCAGAACTCTCAAGTGTCATAGCGGAGTTTGCATTGGATGTGAGTGGCATCCTTTGGAACAGAGTAAAGTAGCAACATGTGGCTGGGATGGATTGATAAAATATTGGTGA 1755 44.62 MDLLQKYSDLNDEVENQSPKSISSSPGASPPRLLPSKSAAPTVDDTILALAVASANQTLSKPIDPIQRAIAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIESFVFDEQYNTFHKYGYAADPSASAGYNYVGDMDALQKNDAISVYNIPQHEQKKRKIEKKKELNEDEDEDEKVDMESTEVDNPASEAWLKRNRKSPWSGKKEGLQTELTEEQKKYAEEHAKKKGEEKGGEKTEVIADKSTFHGKEERDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGTKFLTAGYDKKIKYWDTETGQVISTFSTGKVPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIALHPNTNWLAAQSLDNQILIYGTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGRCWFWDWKSCKVFRTLKCHSGVCIGCEWHPLEQSKVATCGWDGLIKYW 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29678061 29679815 - Bda028468.1 Bda07g01599 10489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01599 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 371 - -
Bda07g01599 584 SMART WD40_4 456 495 IPR001680 GO:0005515
Bda07g01599 584 SMART WD40_4 545 584 IPR001680 GO:0005515
Bda07g01599 584 SMART WD40_4 283 323 IPR001680 GO:0005515
Bda07g01599 584 SMART WD40_4 369 410 IPR001680 GO:0005515
Bda07g01599 584 SMART WD40_4 413 452 IPR001680 GO:0005515
Bda07g01599 584 SMART WD40_4 501 542 IPR001680 GO:0005515
Bda07g01599 584 SMART WD40_4 327 366 IPR001680 GO:0005515
Bda07g01599 584 MobiDBLite consensus disorder prediction 205 221 - -
Bda07g01599 584 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
Bda07g01599 584 MobiDBLite consensus disorder prediction 162 221 - -
Bda07g01599 584 Coils Coil 159 182 - -
Bda07g01599 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 324 IPR001680 GO:0005515
Bda07g01599 584 Pfam WD domain, G-beta repeat 507 542 IPR001680 GO:0005515
Bda07g01599 584 Pfam WD domain, G-beta repeat 414 451 IPR001680 GO:0005515
Bda07g01599 584 Pfam WD domain, G-beta repeat 328 366 IPR001680 GO:0005515
Bda07g01599 584 Pfam WD domain, G-beta repeat 285 323 IPR001680 GO:0005515
Bda07g01599 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 324 - -
Bda07g01599 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 375 IPR001680 GO:0005515
Bda07g01599 584 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 452 IPR001680 GO:0005515
Bda07g01599 584 Gene3D - 270 584 IPR015943 GO:0005515
Bda07g01599 584 MobiDBLite consensus disorder prediction 10 31 - -
Bda07g01599 584 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 452 - -
Bda07g01599 584 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Bda07g01599 584 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Bda07g01599 584 PRINTS G protein beta WD-40 repeat signature 439 453 IPR020472 -
Bda07g01599 584 PANTHER PRE-MRNA-PROCESSING FACTOR 17 49 584 IPR032847 GO:0000398|GO:0071013
Bda07g01599 584 MobiDBLite consensus disorder prediction 162 178 - -
Bda07g01599 584 CDD WD40 286 584 - -
Bda07g01599 584 Coils Coil 213 233 - -
Bda07g01599 584 SUPERFAMILY WD40 repeat-like 281 584 IPR036322 GO:0005515
Bda07g01599 584 MobiDBLite consensus disorder prediction 1 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01599 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - csv:101214854 1057.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01599 Bda-Chr7:29678061 Bda07g01614 Bda-Chr7:29964728 0 dispersed
Bda09g00045 Bda-Chr9:686405 Bda07g01599 Bda-Chr7:29678061 5.47E-10 transposed
Bda05g00747 Bda-Chr5:55954026 Bda07g01599 Bda-Chr7:29678061 3.60E-50 transposed
Bda10g01021 Bda-Chr10:44353954 Bda07g01599 Bda-Chr7:29678061 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42