Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01602 CAAACTATGTCCAGCCCTGATTCGCCTCCACAGAATAACACGGCTACGCAGGCAGCGAGCCCTCCTCCACTGATTTCTCCTCCTCCGCCAGCAGACAATAGCAGTGCTCCTCCGTCTCCTGTAACACCTGTTAGCTCAAACTCTTCCTCTCCGCCGCCAATTTCACCTTCACCGCCTTTGCTATCCCCGCCACCCCCATCAAATCCTCCTCCCGTTCCAGATTCAGGACCTCCTCAAGCCTCATCACCTCCTCCATCTCCGCCAAATTCGAAGGCTTCACCACATTCGCCGCCCACGTCATTTTCCGGGGCCACTTCTCCTCCTCCTCCTTATCAATCTCCCCCATCATCCGGAGGTCAACAATCTCAACCTGCTCCAAACGTTCCTAATCCAACTCCAGGTTCTGGAAGTCCTCAATTATCTCCACCGCCTCCGCTCTCGAACACTCCACAAATAAGTGTACCTTCTCCCGTAATTCCTGCTCCTGGTTTGCCTCAAGAAAAATCTCCTCCTCCACTAAAGCTATTTCCTCCATCAGCTTTTGGTGTACCTCCCCCTCCTCCCTCAACATCGCGCACAAATAATCTGAGACCACCTTCCAAATCAGCAAAATCACCTCCAACTGAATCTGAGTCGAATGGAAACACAGGGACCGCCATAGCTGTGGCAGAGGGCTTTTATTCTCAAGCTCCGCCTTCTTTTACGAACACATATGGAAGTCAAATACCAAATGCATATAATGGTGGAGGGGCTGAATCCGGAGTCATAAGCAATTCTAAAACCCACTTCAGCTACGAGGAGTTGATGGAAATTACACACGGGTTTTCTCGTCAAAATGTTTTAGGAGAGGGTGGTTTTGGATGCGTTTACAAAGGGTGGCTTCCAGATGGAAAAGTGGTAGCAGTTAAGATGCTCAAGGCAGGTAGTGGACAGGGTGAAAGGGAATTCAGGGCAGAAGTTGAAATTATTAGTCGCGTTCATCATCGACATTTGGTTTCTCTAGTCGGGTATTGCATCTCCGAGCAAAACAGATTACTCATCTATGAATTTGTTCCAAATAAGACTCTTGAGAATCACTTGCATGGCCATCCAAAAATTATTCATCGAGATATAAAGTCAGCAAATATTCTGTTGGATGACGCATTTGAGGCACAGGCACGTGTTGCAGATTTTGGACTTGCCAAACTAACTAATGACATTTCTACTCACGTTTCAACTCGAGTCATGGGAACATTTGGTGGGAAACTGACAGATAGGTCGGATGTGTTCTCTTTTGGGGTTGTGCTTCTTGAGCTTATAACAGGGCGCAAACCGGTTGACACAACTCAGCCTTTGGGGGACGAGAGTTTAGTTGAATGGGCTCGTCCACTCCTTATTGATGCACTTGAAACTCTTGATTTTAGAGAACTGGTAGATCCAAGACTTGAAAGGCGTTATGTTGAAAGCGAAATGGTTAGAATGATCGAAGCAGCTGCTGCTTGTATTCGTCATTCGGCTCCAAAACGACCTCGCATGGCACAGGTGGTGAGGGCATTGGATACTGAAAGTGAAATGTCTGACATTTCCAATGGAGTGAAATTTGGGCAAAGCACCATGTATGATTCTGGTCAGTACAACCAAGACATTTCCAGATTCAGAAAGATGGCTCTTGAGCTTACCAAAGAAAGCTCTGAATATGAGCTTTGCAGTGGAGAATACAACTCTCGAGAATTTTCACAATCCACGGATTCATCTATTTATCGAGATGGGTCGAGCAGCGAATCAGAAACCAAAGCATTCAATTTACGCAGTAGCAATCAAAGATATATCCAACCTCAACACCCCTACAATAATCGACGAGATTTCTTGTAA 1851 46.41 QTMSSPDSPPQNNTATQAASPPPLISPPPPADNSSAPPSPVTPVSSNSSSPPPISPSPPLLSPPPPSNPPPVPDSGPPQASSPPPSPPNSKASPHSPPTSFSGATSPPPPYQSPPSSGGQQSQPAPNVPNPTPGSGSPQLSPPPPLSNTPQISVPSPVIPAPGLPQEKSPPPLKLFPPSAFGVPPPPPSTSRTNNLRPPSKSAKSPPTESESNGNTGTAIAVAEGFYSQAPPSFTNTYGSQIPNAYNGGGAESGVISNSKTHFSYEELMEITHGFSRQNVLGEGGFGCVYKGWLPDGKVVAVKMLKAGSGQGEREFRAEVEIISRVHHRHLVSLVGYCISEQNRLLIYEFVPNKTLENHLHGHPKIIHRDIKSANILLDDAFEAQARVADFGLAKLTNDISTHVSTRVMGTFGGKLTDRSDVFSFGVVLLELITGRKPVDTTQPLGDESLVEWARPLLIDALETLDFRELVDPRLERRYVESEMVRMIEAAAACIRHSAPKRPRMAQVVRALDTESEMSDISNGVKFGQSTMYDSGQYNQDISRFRKMALELTKESSEYELCSGEYNSREFSQSTDSSIYRDGSSSESETKAFNLRSSNQRYIQPQHPYNNRRDFL 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29691199 29694577 + Bda028471.1 Bda07g01602 10492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01602 616 SMART serkin_6 275 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g01602 616 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 363 581 - -
Bda07g01602 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
Bda07g01602 616 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 231 362 - -
Bda07g01602 616 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 231 362 - -
Bda07g01602 616 ProSitePatterns Protein kinases ATP-binding region signature. 281 303 IPR017441 GO:0005524
Bda07g01602 616 MobiDBLite consensus disorder prediction 44 94 - -
Bda07g01602 616 MobiDBLite consensus disorder prediction 1 20 - -
Bda07g01602 616 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 363 581 - -
Bda07g01602 616 MobiDBLite consensus disorder prediction 1 216 - -
Bda07g01602 616 MobiDBLite consensus disorder prediction 572 607 - -
Bda07g01602 616 Pfam Protein tyrosine and serine/threonine kinase 365 512 IPR001245 GO:0004672|GO:0006468
Bda07g01602 616 Pfam Protein tyrosine and serine/threonine kinase 278 363 IPR001245 GO:0004672|GO:0006468
Bda07g01602 616 MobiDBLite consensus disorder prediction 21 37 - -
Bda07g01602 616 MobiDBLite consensus disorder prediction 101 115 - -
Bda07g01602 616 MobiDBLite consensus disorder prediction 126 193 - -
Bda07g01602 616 SUPERFAMILY Protein kinase-like (PK-like) 260 510 IPR011009 -
Bda07g01602 616 Gene3D Transferase(Phosphotransferase) domain 1 357 527 - -
Bda07g01602 616 Gene3D Phosphorylase Kinase; domain 1 245 350 - -
Bda07g01602 616 ProSiteProfiles Protein kinase domain profile. 275 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g01602 616 MobiDBLite consensus disorder prediction 194 216 - -
Bda07g01602 616 MobiDBLite consensus disorder prediction 572 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01602 Bda-Chr7:29691199 Bda11g01113 Bda-Chr11:11007129 1.01E-130 dispersed
Bda10g01025 Bda-Chr10:44365833 Bda07g01602 Bda-Chr7:29691199 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69735 PF07714 PK_Tyr_Ser-Thr 1.70E-12 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01602 - - egr:104433531 536.184