Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01603 ATGAACAATTTCAACCTCAATGAGCAGGGCCTCGAAAACTGCTTTCTAAATCCTCAAACTTCTCCTACCATCTGCAATACCGCTCACAGTAAACAAATGGTTCCTTTGCCATTGACATCAACCTCTTATCCCAGCTTTGAAGGTTCATCAAGCAGCTCAAATCCTTCAAACGAGCATCTTTCTTTCAATTACTACATTGACTTTGCATCGAATTCTGCATCCTTTGAAAATTTGTCGAAGGTGCAGATGGGTTTGGTTTTAGGACGGGAGAATGCGAAGGAGAGAGATAATGCTGCAAAATTGGCAGTGAGCGGAGGAAGACAGCAGAGCCAGTCAAAGAATCTCTTAGCTGAGAGGAGGAGAAGGAATAAAATCAGAGATGGGTTGTATACTCTCCGAGCTTTAGTCCCTAAAATATCAAAGATGGATAGAGCTTCGATTGTAGGAGATGCAATAAAGTACATCGAGGAGCTTCTGGAGGAGATAAACAACTTTCGAAACGAGCTACTGGAAATGGAGGAAGCCGATCGCAAAACCTGCAAAGAAGAACTGAAGATCTCACCTCCATCATCAGAGGGAGAACAAGAAGGTGCAATCTCAAGCTGTTTACGTGTTTCGACTGAAAGGATGCACATGGAGGTTCAAGTTGAAGTATACCATATCACTAAAAGAGATTTTGTTATCAAGTTATTCCGAGAGCAAAAGAGAGGTGGGTTTACAAAATTAATGGAGGCTATAGAATCTTTGAGCCTGCGAGTTGTCGATGCCAATGTTACCACTTTGAACGAGAAAGTTGTGAATATTCTCACTGTCAAGGCAAACAACACAAACATCTCATCACAGAAGCTGAAGGATTTTCTGATGAAGCTAAAATGGTAG 879 41.64 MNNFNLNEQGLENCFLNPQTSPTICNTAHSKQMVPLPLTSTSYPSFEGSSSSSNPSNEHLSFNYYIDFASNSASFENLSKVQMGLVLGRENAKERDNAAKLAVSGGRQQSQSKNLLAERRRRNKIRDGLYTLRALVPKISKMDRASIVGDAIKYIEELLEEINNFRNELLEMEEADRKTCKEELKISPPSSEGEQEGAISSCLRVSTERMHMEVQVEVYHITKRDFVIKLFREQKRGGFTKLMEAIESLSLRVVDANVTTLNEKVVNILTVKANNTNISSQKLKDFLMKLKW 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29694986 29696131 - Bda028472.1 Bda07g01603 10493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01603 292 Pfam Helix-loop-helix DNA-binding domain 116 158 IPR011598 GO:0046983
Bda07g01603 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Bda07g01603 292 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 290 - -
Bda07g01603 292 PANTHER TRANSCRIPTION FACTOR BHLH90 25 290 - -
Bda07g01603 292 Coils Coil 148 175 - -
Bda07g01603 292 SMART finulus 115 164 IPR011598 GO:0046983
Bda07g01603 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 172 IPR036638 GO:0046983
Bda07g01603 292 Gene3D - 103 175 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01603 - - - pvy:116119040 187.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00375 Bda-Chr3:3144811 Bda07g01603 Bda-Chr7:29694986 8.20E-21 dispersed
Bda07g01603 Bda-Chr7:29694986 Bda11g01575 Bda-Chr11:48947578 1.63E-19 dispersed
Bda07g01603 Bda-Chr7:29694986 Bda07g00648 Bda-Chr7:7818050 5.30E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g698 . . . . . . . . . . . . . . Sed04g0627 . Cpe01g01533 Bhi07g01732 Tan04g1237 Cmetu10g1279 . . . . Cla05g02543 Cam05g2733 Cec05g2764 Cco05g2804 Clacu05g2734 Cmu05g2587 Cre05g2701 . . . . Lsi04g00551 . Chy10g00903 . . . Bda07g01603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16197 PF00010 HLH 6.50E-09 No_clan Bda TF