Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01640 ATGCTCGTCTTCGAAGCGCTCGCCTGGTGGTCGAATTTGGTTGGAGACCGAGAGCTTCAGATGAGGCTGGAAACAGAAGAAGAAAAGTTGCTGAAAGAAGAACTAGATTATTTAAAGAATGAACTCAATGATGAAGTTAAAGCCAGGGTGAAAAGGGAGTCACTGCAGGAAACTGCTGAAGATCAGCCTAATCTACAAGATATTTATATTCTGAAAGAGAGAGAACTGGAGAAACTGATCCGTGATTTAGATGACAAAGTTCGCTTTGGGCAGAAGGCAATCGAAAGGCCAAGCCCTGGAACTGATAGAGCTGCTATCCTTGAGAGACTACCTTCTCAATCAGGAAAGGAGTCTAGAAACGCTGAGCTAATGGATAGACCTTGCTTTCACAGTGAAGGAGATGGGTGGTCAGGGCCTGCAGATGATAGAAGAGGAATTCAAGGTGACCGGAATAGAGTTTCTTTGGTCAACAGAGACTTTGAGAGATCCGCTGCGGATTGTGAAAGAATTAAAGATAGAGTGATCAGATCTGCAGATTATGACAAAATTAAAGATAGGGTGATCAAAGGCAAGAGACATATTTATAGGGTAGGTACCATTATCTACTTGAGAGTCAAGCAGCGATGTTGTTGTAACATATTGTAA 645 42.48 MLVFEALAWWSNLVGDRELQMRLETEEEKLLKEELDYLKNELNDEVKARVKRESLQETAEDQPNLQDIYILKERELEKLIRDLDDKVRFGQKAIERPSPGTDRAAILERLPSQSGKESRNAELMDRPCFHSEGDGWSGPADDRRGIQGDRNRVSLVNRDFERSAADCERIKDRVIRSADYDKIKDRVIKGKRHIYRVGTIIYLRVKQRCCCNIL 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30623969 30626292 - Bda028521.1 Bda07g01640 10530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01640 214 MobiDBLite consensus disorder prediction 95 122 - -
Bda07g01640 214 Pfam Plant specific eukaryotic initiation factor 4B 22 152 IPR010433 GO:0003743
Bda07g01640 214 Coils Coil 21 41 - -
Bda07g01640 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 23 164 - -
Bda07g01640 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 23 164 IPR010433 GO:0003743
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01640 - - - mnt:112092297 132.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00987 Bda-Chr10:44128601 Bda07g01640 Bda-Chr7:30623969 9.13E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g628 . . . . . . Bma14g01825 Bma15g00222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00846 . Bda07g01640 . . . . . . . . . Cma05g00048 . Car05g00036 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008333 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 0 1 1 0 1 1 34