Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01646 TTGCCACAGGTTACAGCCGCTCTTTCACAAGCGGGCCTTGAGTCTTCAAATCTAATCATTGGTATTGATTTCACAAAGAGTAATGAGTGGACAGGTTCAAGATCATTCAATAGACGCAGTTTACACCGAATAGGAGACACCCAAAATCCCTACGAGCAAGCCATATCAATTATTGGTAGAACTTTATCGGCTTTCGACGAGGATAACTTGATTCCTTGTTTCGGATTTGGGGATGCATCAACACATGATCAACATGTCTTTAGTTTCTATGAGAATGGAAGATACTGTAATGGATTTGAGGAAGTTTTAACGCGGTACAGAGAGATTGCTCCTAATCTTTGTCTAGCAGGACCTACCTCGTTTGCACCAATCATTGACATGGCCGTGACTATTGTGGAGAAAAGTGGCGGCCAGTACCATGTTCTGCTGTTAATTGCAGACGGGCAGGTAACTAGAAGCAATGACAAACATCTTGGCCGGTTTAGCCCTCAAGAACAGAGGACTATCGATGCTATTGTAAGAGCAAGTGAGTACCCTTTGTCGATAGTCTTAGTTGGAGTTGGAGACGGGCCTTGGGACATGATGAAGGAATTCGATGACAACATTCCTGCTAGAGCTTATGATAATTTCCAGTTCGTCAACTTCACCGAAATCATGTCGAAGAACGTCAATATGTTTCAAAAGGAGAAAGAATTCGCTCTTTCTGCCTTAATGGAAATACCTTCTCAGTACAAAGCGACTCTCGAGCTCGGAATTTTGGGCCGGGAAAGTGGGGGTGCTTCTCAGAGAATTCCTCTTCCACCTCCACTTCATGGTGCAGTATCCTACACCAGCCAGGACAGAAACTATCCCTTTGCCAGTATCAAGCCGACGGCACCGCCATCTTCAAATTTTGCTCACGACAATTGGCTTTGTCCCATCTGCGCTGCCAATTCAAAGGACATGGCATTTGGGTGCGGCCATCAGACTTGCTGTGATTGCGGATCGTCTCTCGAATTCTGCCCCATTTGCCGCTGCCTAATCCATATCAGAATAAAACTTTATTAA 1047 44.89 LPQVTAALSQAGLESSNLIIGIDFTKSNEWTGSRSFNRRSLHRIGDTQNPYEQAISIIGRTLSAFDEDNLIPCFGFGDASTHDQHVFSFYENGRYCNGFEEVLTRYREIAPNLCLAGPTSFAPIIDMAVTIVEKSGGQYHVLLLIADGQVTRSNDKHLGRFSPQEQRTIDAIVRASEYPLSIVLVGVGDGPWDMMKEFDDNIPARAYDNFQFVNFTEIMSKNVNMFQKEKEFALSALMEIPSQYKATLELGILGRESGGASQRIPLPPPLHGAVSYTSQDRNYPFASIKPTAPPSSNFAHDNWLCPICAANSKDMAFGCGHQTCCDCGSSLEFCPICRCLIHIRIKLY 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30685341 30687292 + Bda028527.1 Bda07g01646 10536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01646 348 Pfam Copine 40 253 IPR010734 -
Bda07g01646 348 SUPERFAMILY vWA-like 16 199 IPR036465 -
Bda07g01646 348 SMART VWA_4 15 220 IPR002035 -
Bda07g01646 348 CDD RING-HC_RGLG_plant 304 348 IPR045317 GO:0061630|GO:0070534
Bda07g01646 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 348 IPR013083 -
Bda07g01646 348 PANTHER COPINE FAMILY PROTEIN 1 2 348 - -
Bda07g01646 348 PANTHER RING-FINGER PROTEIN 2 348 - -
Bda07g01646 348 ProSiteProfiles Zinc finger RING-type profile. 305 338 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01646 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - ming:122076839 537.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01762 Bda07g01646 CCT
Bda01g01762 Bda07g01646 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01646 Bda-Chr7:30685341 Bda12g00484 Bda-Chr12:6432562 0 dispersed
Bda11g01570 Bda-Chr11:48868183 Bda07g01646 Bda-Chr7:30685341 3.59E-18 transposed
Bda12g00395 Bda-Chr12:4687693 Bda07g01646 Bda-Chr7:30685341 8.97E-22 transposed
Bda12g00471 Bda-Chr12:5894989 Bda07g01646 Bda-Chr7:30685341 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136