Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01650 ATGGCGCTCGCATTCGATGAGTTTGGTCGGCCATTCATTATAATCAAGGAGCAAGAGCAGAAGACTCGGTTGAGAGGTCTCGATGCTCAAAAGGCCAACATTTCGGCTGGTAAAGCTGTTGCTCGCATCCTCAGGACTTCGCTTGGCCCGAAAGGAATGGACAAGATGCTGCAGAGCCCCGATGGGGACGTCACTATTACCAATGATGGAGCAACAATTTTGGAACAAATGGACGTTGACAATCAAATTGCCAAGTTGATGGTTGAGCTATCACGCAGTCAGGATTATGAAATCGGTGATGGGACAACAGGTGTTGTCGTGATAGCTGGGGCACTATTAGAACAGGCTGAACGTCTGTTAGAACGTGGCATCCATCCCATTAGAGTTGCAGAAGGCTATGAACTGGCTTCTAGGATTGCCGTTGAGCATCTTGAACATATAGCTCAGAAATTTGATTTTGGAGCAACTAATTTTGAGCCTCTTGTTCAAACTTGCATGACGACTTTGTCCTCTAAGATTGTGAACCGATGCAAGCGCGATTTGGCCGAGATATCAGTTAAAGCAGTTCTTGCTGTTGCTGATCTAGAGAGAAAGGATGTTAATTTAGATTTAATAAAAGTAGAGGGCAAAGTTGGGGGAAAATTAGAAGATACCGAGCTTATATATGGTATCGTTGTGGACAAAGATATGAGTCATCCTCAGATGCCAAAGAAAATTGAAGATGCAAAGATTGCTATCTTGACTTGCCCCTTTGAGCCTCCTAAGCCAAAGACAAAACATAAGGTTGATATTGACACAGTTGAGAAATTCCAAACTTTGCGTCAGCAAGAGCAGAAGTATTTTGATGACATGGTTCAGAAATGCAAGGATGTTGGTGCTACCCTCGTAATATGCCAATGGGGTTTTGATGATGAGGCCAACCATCTGTTGATGCACCGAAACTTGCCTGCTGTGAGATGGGTTGGTGGTGTAGAGTTGGAGCTGATAGCTATAGCTACAGGTGGAAGAATTGTTCCTAGGTTCCAGGAACTGACTCCAGAAAAGCTTGGAAAGGCAGCTGGATTAGTTCGAGAAAAAGCATTTGGTACTACAAAAGATCGAATGTTATACATTGAACACTGTGCAAATTCAAAGGCTGTGACAATATTTATTCGTGGAGGCAACAAAATGATGATAGAGGAGACAAAACGCAGTATCCATGATGCTTTATGTGTGGCAAGGAATCTCATTTGCAACAACTCAATAGTGTATGGTGGTGGATCTGCTGAAATTTCCTGCTCAATTGCTGTAGAGGCAGCTTCAGATAGATATCGTGGAGTTGAACAGTATGCTATTAGAGCTTTTGCCGATGCCTTGGATTCTGTTCCGATGGCACTAGCAGAGAACAGCGGTCTCCAACCAATTGAAACTCTTTCTGCAGTGAAAGCTCAACAAATTAAGGAGAATAGTGCATACTGCGGAATTGATTGCAATGATGTTGGGACGACTGACATGCGAGAGCAGAACGTGTTTGAGACACTGATTGGTAAGCAGCAGCAGATTTTACTGGCAACTCAAGTTGTGAAGATGATTTTGAAAATTGACGACGTCATTTCTCCGTCCGAGTTTTGA 1611 43.39 MALAFDEFGRPFIIIKEQEQKTRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVIAGALLEQAERLLERGIHPIRVAEGYELASRIAVEHLEHIAQKFDFGATNFEPLVQTCMTTLSSKIVNRCKRDLAEISVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKKIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAAGLVREKAFGTTKDRMLYIEHCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLICNNSIVYGGGSAEISCSIAVEAASDRYRGVEQYAIRAFADALDSVPMALAENSGLQPIETLSAVKAQQIKENSAYCGIDCNDVGTTDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEF 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30728927 30732173 + Bda028531.1 Bda07g01650 10540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01650 536 SUPERFAMILY GroEL apical domain-like 217 386 IPR027409 -
Bda07g01650 536 SUPERFAMILY GroEL-intermediate domain like 156 412 IPR027410 -
Bda07g01650 536 PANTHER CHAPERONIN 5 533 IPR017998 GO:0140662
Bda07g01650 536 Pfam TCP-1/cpn60 chaperonin family 40 532 IPR002423 GO:0005524
Bda07g01650 536 CDD TCP1_epsilon 6 532 IPR012718 GO:0005524|GO:0006457|GO:0051082
Bda07g01650 536 PANTHER BNAA08G19100D PROTEIN 5 533 - -
Bda07g01650 536 Gene3D GroEL 222 377 IPR027409 -
Bda07g01650 536 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bda07g01650 536 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bda07g01650 536 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bda07g01650 536 Gene3D - 37 531 IPR027413 -
Bda07g01650 536 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 3 533 IPR012718 GO:0005524|GO:0006457|GO:0051082
Bda07g01650 536 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Bda07g01650 536 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
Bda07g01650 536 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Bda07g01650 536 PRINTS Tailless complex polypeptide 1 (chaperone) signature 381 403 IPR017998 GO:0140662
Bda07g01650 536 PRINTS Tailless complex polypeptide 1 (chaperone) signature 415 427 IPR017998 GO:0140662
Bda07g01650 536 Gene3D - 150 413 IPR027410 -
Bda07g01650 536 SUPERFAMILY GroEL equatorial domain-like 21 532 IPR027413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01650 K09497 CCT5; T-complex protein 1 subunit epsilon - nnu:104593014 992.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01650 Bda-Chr7:30728927 Bda11g00955 Bda-Chr11:9326300 7.47E-80 dispersed
Bda11g01779 Bda-Chr11:52651398 Bda07g01650 Bda-Chr7:30728927 1.83E-101 transposed
Bda11g01795 Bda-Chr11:52971535 Bda07g01650 Bda-Chr7:30728927 1.83E-101 transposed
Bda14g01201 Bda-Chr14:11966672 Bda07g01650 Bda-Chr7:30728927 9.21E-82 transposed
Bda10g00974 Bda-Chr10:44004316 Bda07g01650 Bda-Chr7:30728927 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g592 . . . . . Bpe10g00853 Bma14g01835 Bma15g00232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00834 Blo11g01032 Bda07g01650 . . . . . . . . . Cma05g00055 . Car05g00043 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004994 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 0 1 1 1 1 2 40