Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01679 ATGGAGACCCAGTTCCATCATAATCTTTTCGAAAGGCGCTCTCTTTTGAAATCCAAGACTCCTGCTGTCAAATGGCTCAAAGAGTGGGTACCCCAAGATGTTGTAGCAACCGGAGGAAAGTGCTCTCTTTTCAAATGGGTCAGAGAGGATACGTTGAAGGCCTTAACAGAGAAGGCAAACCAACCAGAGGCACCTGATCCAGAACCAGAACCAACGACTGAAGTGCTTTTCTTTTGTAGCTATGATGGCTGCGGCAAGACATTTATCGATGCTGGTGCTTTGAGAAAGCATTCTCACATCCATGGCGAGAGGCAATACGTTTGTCATTATGATGGATGTGGAAAGAAATTTCTGGATAGTTCAAAGTTGAAACGACATTTTCTTATCCATACAGGAGAAAGAGATTTTGTGTGCCCTCATGAAGGCTGCGGGAAGGCATTCTCCCTGGATTTCAACTTAAGGTCGCACATGAAAACACACTCGCAAGAAAACTACCATATCTGCCCTTACCAGGATTGTGGAAAGAGATTTGCTCATGAATACAAGCTAAAGAACCACATTGCATCTCACCATGAAAAGAATGTAACCCCAGAATTGCCAAAATTTACGCCACATTTGGAGAAGCAAACCAAGGTTTCAAAGGCTCCTGCTGCAGCATACGGTTCTGCATCTTCTGATCGGCCTTATGCTTGTCCATACGAAGGTTGCGAAAAGGCATACATACACGAATACAAGCTCAAACTTCATCTAAGGAGAGAGCATCCAGGTCACATGTACGATGAAAATGCAGATAATGGCATATCGAATGCTGATAATGACATGGACGAAGCTAGTGACCCCGAAGGGTTTGGAGGAAAACGTGTAAACAGCAAAAGCCAGAAACAGAGCAGTAGGTCTAAACCAAGCCAGAAGTTGCCTCAGGCAAAAGTTTCAAAGCGGAAGGGCTCAACTCCGGCTTCTGCTCCTCAGGAGCATGCACTGAAAAAACAATGGCCGGTCAGAGAAGAAGCTTATGAGGAAGAAGATAGCGAAGAAACAGAGGAGGACCGAGATGAGGATGGATGGAGATACGATAACAATGAAGACGAAGACGAAGAAGAAACGGAATACGAAGATTAA 1119 44.68 METQFHHNLFERRSLLKSKTPAVKWLKEWVPQDVVATGGKCSLFKWVREDTLKALTEKANQPEAPDPEPEPTTEVLFFCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYQDCGKRFAHEYKLKNHIASHHEKNVTPELPKFTPHLEKQTKVSKAPAAAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHMYDENADNGISNADNDMDEASDPEGFGGKRVNSKSQKQSSRSKPSQKLPQAKVSKRKGSTPASAPQEHALKKQWPVREEAYEEEDSEETEEDRDEDGWRYDNNEDEDEEETEYED 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31147999 31151345 + Bda028568.1 Bda07g01679 10569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01679 372 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Bda07g01679 372 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Bda07g01679 372 MobiDBLite consensus disorder prediction 337 372 - -
Bda07g01679 372 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Bda07g01679 372 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Bda07g01679 372 Gene3D Classic Zinc Finger 103 133 - -
Bda07g01679 372 Gene3D Classic Zinc Finger 163 195 - -
Bda07g01679 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Bda07g01679 372 Gene3D Classic Zinc Finger 204 269 - -
Bda07g01679 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Bda07g01679 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Bda07g01679 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Bda07g01679 372 PANTHER BNAA03G13270D PROTEIN 3 371 - -
Bda07g01679 372 MobiDBLite consensus disorder prediction 207 227 - -
Bda07g01679 372 MobiDBLite consensus disorder prediction 257 372 - -
Bda07g01679 372 MobiDBLite consensus disorder prediction 288 318 - -
Bda07g01679 372 Gene3D Classic Zinc Finger 77 102 - -
Bda07g01679 372 Gene3D Classic Zinc Finger 134 161 - -
Bda07g01679 372 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Bda07g01679 372 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 3 371 - -
Bda07g01679 372 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Bda07g01679 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Bda07g01679 372 SMART c2h2final6 136 160 IPR013087 -
Bda07g01679 372 SMART c2h2final6 166 190 IPR013087 -
Bda07g01679 372 SMART c2h2final6 229 254 IPR013087 -
Bda07g01679 372 SMART c2h2final6 77 101 IPR013087 -
Bda07g01679 372 SMART c2h2final6 106 130 IPR013087 -
Bda07g01679 372 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Bda07g01679 372 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Bda07g01679 372 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Bda07g01679 372 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Bda07g01679 372 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01667 Bda-Chr7:30947663 Bda07g01679 Bda-Chr7:31147999 0 dispersed
Bda07g01679 Bda-Chr7:31147999 Bda14g00425 Bda-Chr14:3087216 5.51E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16200 PF00096 zf-C2H2 0.0029 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01679 - - qsu:111997563 565.074