Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01710 ATGAGTACGCTTCAGACATGGAGAAAAGCGTATGGCGCGCTGAAAGATAGCACAAAAGTCGGTCTCGCCCACGTCAATAGCGATTACGCGGATTTGGATGTTGCTGTCGTCAAAGCTACTAACCACGTTGAGTGCCCGCCCAAAGAAAGACATCTACGGAAAATTTTGATTGCTACATCAGCAATTCGACCTCGTGCCGATGTTGCATACTGTATCCATACCCTTTGGAGGCGGTTGGCCAAGACGCATAATTGGACGGTGGCTCTAAAAACACTGATTGTTATTCATAGAACATTGAGAGAGGGTGATCCGACATTTAGAGAAGAACTTCTAAATTTTTCACAAAGAACACGCATTCTACAACTGTCCAATTTCAAAGATGATTCAGGTCCTATTGCTTGGGATTGCTCTGCTTGGGTACGTACATATGCATTGTTTTTGGAGGAGCGACTTGAATGTTTCAAAATTTTGAAATATGACATTGAGGCTGAGCGCCTACCTAGAGCTGCCCAAGGGCAAGAGAAGGGTTATAGCAGAACCAGAGAATTGGATAGCGAAGAATTGTTGGAACAGTTGCCTGCTTTGCAGCAGCTTCTGTATCGTCTTATTGGCTGCAAGCCAGAAGGAGCAGCGAAGGGTAATTACGTCATACAATATGCCCTTGCTCTGGTATTGAAAGAGAGCTTTAAAATTTATTGTGCAGTTAACGATGGAATTATCAATCTTGTTGACAAGTTTTTTGAGATGCCAAGACATGAAGCTATGAAGGCCCTTGATATCTATAAACGAGCTGGTCAACAGGCTGGTAGTCTCTCCGATTTCTATGATTTTTGCAAAGGGTTAGAACTTGCGAGAAACTTCCAGTTTCCTGTTTTAAGAGAGCCACCGCAATCGTTCCTTAACACAATGGAGGAATATATTAGAGAAGCGCCAAGAGTAGTCACAGTCCCTACAGAGCCACTGCTGCAACTGACGTATAAGCCAGAGGAATCTACATCCGAAGACGGCAATATAATTAGTGAAGAACAGGCTCCTCTCCAAGATAATGATCCCATCCCTAATGTGGAGGCTGCCGTATTTCCTGATCCACAACCTACCAAAAACATTCAAGATACTGGCGATTTATTAGGATTGAATTTTTCAACGGCTGATGTATCTACAATTGAAGAAGTAAATGCTTTGGCTTTAGCCATAGTCCCCACTGAGTCAAATAGTGCCCCCACATTTAATTCTAACGCATTTCAAGAGAAGGATTTTGATCCAACTGGATGGGAGCTGGCCCTCGTCACCACTCCAAGCAGCAACATCTCAGCAGTAAATGAAAGGCAATTGGGTGGTGGATTGGACACACTTACTCTCAACAGTTTGTACGATGAGGGAGCTTACAGAGCTTCTCAACAGCCAGTATATGGAGTACCTGCACCAAACCCATTTGAGGTCCAAGATCCGTTTGCTTTGTCCAACACCATTGCCCCCCCACCATCTGTGCAAATGGCAGGGATGGGACAACCTCCGACAAATCCTTTTGGTCCCTACCAGCCTACATTTTCGGCTCAGCCACAGCCACAGCCACAGCCACAGCAGCAGCAGCATTTGATGATGAACCCATCAAACCCTTTTGGTGATGCAGGGTTCGGAGCATTTCCTGTGAATCCGCCTCTTCATCCACACTCAAATAATCCATTTGGAAGCACAGGCCTTCTG 1704 45.07 MSTLQTWRKAYGALKDSTKVGLAHVNSDYADLDVAVVKATNHVECPPKERHLRKILIATSAIRPRADVAYCIHTLWRRLAKTHNWTVALKTLIVIHRTLREGDPTFREELLNFSQRTRILQLSNFKDDSGPIAWDCSAWVRTYALFLEERLECFKILKYDIEAERLPRAAQGQEKGYSRTRELDSEELLEQLPALQQLLYRLIGCKPEGAAKGNYVIQYALALVLKESFKIYCAVNDGIINLVDKFFEMPRHEAMKALDIYKRAGQQAGSLSDFYDFCKGLELARNFQFPVLREPPQSFLNTMEEYIREAPRVVTVPTEPLLQLTYKPEESTSEDGNIISEEQAPLQDNDPIPNVEAAVFPDPQPTKNIQDTGDLLGLNFSTADVSTIEEVNALALAIVPTESNSAPTFNSNAFQEKDFDPTGWELALVTTPSSNISAVNERQLGGGLDTLTLNSLYDEGAYRASQQPVYGVPAPNPFEVQDPFALSNTIAPPPSVQMAGMGQPPTNPFGPYQPTFSAQPQPQPQPQQQQHLMMNPSNPFGDAGFGAFPVNPPLHPHSNNPFGSTGLL 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32005008 32014744 + Bda033991 Bda07g01710 10600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01710 568 Gene3D ANTH domain 173 324 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Bda07g01710 568 SUPERFAMILY GAT-like domain 178 309 - -
Bda07g01710 568 MobiDBLite consensus disorder prediction 507 521 - -
Bda07g01710 568 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 550 IPR045192 GO:0048268|GO:0072583
Bda07g01710 568 PANTHER OS05G0549000 PROTEIN 1 550 - -
Bda07g01710 568 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Bda07g01710 568 MobiDBLite consensus disorder prediction 522 536 - -
Bda07g01710 568 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Bda07g01710 568 SMART enth_2 30 161 IPR013809 -
Bda07g01710 568 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Bda07g01710 568 MobiDBLite consensus disorder prediction 500 568 - -
Bda07g01710 568 CDD ANTH_N 32 154 - -
Bda07g01710 568 Gene3D - 7 161 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01710 - - - rcu:8262519 926.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01710 Bda-Chr7:32005008 Bda09g01030 Bda-Chr9:40412861 1.48E-164 dispersed
Bda11g00195 Bda-Chr11:2480877 Bda07g01710 Bda-Chr7:32005008 3.29E-37 dispersed
Bda07g01710 Bda-Chr7:32005008 Bda02g00201 Bda-Chr2:36890974 4.15E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g553 . . . . . . Bma14g01890 . . . . Cma04g00026 . Car04g00035 . . . Bhi07g00107 . . . . . . . . . . . . . . . . . . . . . . Blo11g00959 Bda07g01710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00988 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001235 1 2 1 3 2 3 4 3 2 2 2 2 3 1 2 4 3 4 4 3 2 2 2 2 3 3 2 6 2 2 77