Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01725 ATGTCGACTCAAAGCAATGACTTTGAAGTCAATAGAGTCTTCATTGGAGCTGGCTGCAACAGAATCGTCAACAATGTCTCGTGGGGTGCTTGTGATTTGGTAGCTTTTGGCACCCAAAACGCCGTCGCTATATTCTGTCCCAAGTCGGCTCAAATTTTGACCACTCTTCCGGGTCACAATGCCTCTGTGAACTGTACTCTTTGGCTGCCTAATAACAAGTTTTCGTTTAAAGCTAAACATTTGGAACAACATTATCTGTTATCAGCCGATACTGACGGTGTCATTATATTGTGGGAATTATCTATTCCTCTACACAAGTGGAAGTGGGTATTGCAATTGCCGCAATCACATAAAAAAGGGGTCACTTGCATCACTGCAATTATGGTTTCTGAATTTGAGGCAATATTTGCATCTACTTCTTCAGATGGTTCAATCTTTGTCTGGGAAGCTGTGTTTCCATCTACTAATAGCGGTGATTGTGAGGTAAAGTCTTTGGATTCTTTCTCTATCGGTTCAAAAGCTATGGTGGCACTTTCTTTAGCAGAATTGCCTGGAGATAACGGGAATATAGTGTTAGCAATGGGAGGATTAGATAACAAGATTCATATTTATTGTGGGAAGAGATCAGGAAAGTTTGTTCGAGCTTGTGAGCTAAAAGGGCATTCAGATTGGATTCGAAGTCTGGACTTTTCTTTGCCTTTATGTACAAATGGTGATGCAAATGCCATTTTCCTTGTAAGTTCATCTCAAGACAAAAGCATACGCATTTGGAAGATTGTTCATCGTGGTTCTTTAGCCAACATCCCTGGATTAAAAAACAAAGAAGAAATAAATTTATCTTCTTACATTGAAGGTCCTCTACTTGTGGTCGGGTCATCCTCTTATCAAATATCTTTGGAATCTCTACTTATTGGTCATGAGGATTGGGTTTACTCAGTGGAATGGGGGCCACCTTCAAATTCAGCTGCAGAGGGGGTCATCTGCAATCAACCTCAAAGCATCTTATCTGCATCCATGGACAAAACAATGATGATTTGGAAACCTGAACAGACTTCAGGAATATGGATGAATGTAGTCACTGTTGGAGAAATTAGCCATTGTGCTTTGGGATTCTATGGAGGCCATTGGAGTCCAAAAGGGGATGCCATTTTAGCTCATGGATATGGTGGATCTTTCCATCTCTGGAAGAATGTTGGTACTAATATAGACAATTGGCAACCACAAAAAGTTCCCTCTGGGCACTTTGCCTCTGTGACGGATATTTCGTGGGCAAAATCTGGTGAATTCTTGCTTTCAGTCAGCCATGACCAGACAGCTAGAATTTTCTCTCCATGGAAAATGGACACTTTTCATGAAGAAGGATACTCTTGGCATGAAATAGCCCGCCCTCAAGTTCATGGTCATGATATTAATTGTGTAACAATCATCCAAGGGGAAGGCAACTATTGCTTTGTTAGTGGAGCCGAAGAGAAAGTTGCCAGAGTTTTCGAAGCTCCTTTATCTTTTCGCAAGACATTGAATCATGCTACTTCTAAGAACTCTACTTTATCTGAAGAATTTTTGGGCGCTGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTGTCACAAAAACCTATATATGTTCAAGTTTCCAATCGACCTCAAGACAGAAAAGTCAGTGATGGTGCCGACACCCTTGAAACTGTTCCTGAAGCTGTTCCCACTGTGCTGACAGAGCCTCCAATTGAAGATCAATTGGCATGGCACACCCTCTGGCCAGAGTCTCACAAACTTTACGGCCATGGAAATGAGCTCTTCTCTTTGTGCTGTGATCACGAGGGGAAGCTCCTTGCTTCATCATGCAAGGCTCAAACTGCAAATGCAGCTGAAATATGGCTTTGGGAAGTTGGGACTTGGAAGGCCGTAGGTCGCTTGCAATCTCATGCATTAACAATAACACAAATGGAATTCTCTCACGATTCTCATTTGCTTTTGGCAGTCTCAAGAGATCGGCATTTTTCCGTCTTTAAAATCCACAGAAATGGTCAAAATGAGATCCACCACGAGCTTTTATCAAGACAAGAGGCTCACAGAAGAATTATATGGTCATGCTCTTGGAACCCGCACGGCCATGAATTCGCCACCGGCTCAAGGGACAAGACTGTTAAGATTTGGGGTGTGACAGACGGATCATCAGTTAGGCCACTCAAGACCTTGCCACCGTTCAGAAGCAGCGTCACCGCATTGTCTTGGGCAGGCCTCGATCCAAATAGACAAAGTGGGATTCTGGCGATAGGGATGGAAAGTGGTCTCATCGAGTTATGGAATTTGTCGATCAAAAGAAACACTAACAACGTCAGTTCAGATATAGATGCTGGAGTAGCTGTCCGGCTCGACGCATTTATGTGCCATGCGTCCCCGGTTAATCGATTGAATTATCCTAAAACACATTGTACTAGAGGTTGTGAAGCTCTTGAACTTGTTGGAAATGGATTCTGGTCAAGCCTAGCAGTACCAGAGGTAGGAAATTGA 2517 42.87 MSTQSNDFEVNRVFIGAGCNRIVNNVSWGACDLVAFGTQNAVAIFCPKSAQILTTLPGHNASVNCTLWLPNNKFSFKAKHLEQHYLLSADTDGVIILWELSIPLHKWKWVLQLPQSHKKGVTCITAIMVSEFEAIFASTSSDGSIFVWEAVFPSTNSGDCEVKSLDSFSIGSKAMVALSLAELPGDNGNIVLAMGGLDNKIHIYCGKRSGKFVRACELKGHSDWIRSLDFSLPLCTNGDANAIFLVSSSQDKSIRIWKIVHRGSLANIPGLKNKEEINLSSYIEGPLLVVGSSSYQISLESLLIGHEDWVYSVEWGPPSNSAAEGVICNQPQSILSASMDKTMMIWKPEQTSGIWMNVVTVGEISHCALGFYGGHWSPKGDAILAHGYGGSFHLWKNVGTNIDNWQPQKVPSGHFASVTDISWAKSGEFLLSVSHDQTARIFSPWKMDTFHEEGYSWHEIARPQVHGHDINCVTIIQGEGNYCFVSGAEEKVARVFEAPLSFRKTLNHATSKNSTLSEEFLGAVQILGANMSALGLSQKPIYVQVSNRPQDRKVSDGADTLETVPEAVPTVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHEGKLLASSCKAQTANAAEIWLWEVGTWKAVGRLQSHALTITQMEFSHDSHLLLAVSRDRHFSVFKIHRNGQNEIHHELLSRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWGVTDGSSVRPLKTLPPFRSSVTALSWAGLDPNRQSGILAIGMESGLIELWNLSIKRNTNNVSSDIDAGVAVRLDAFMCHASPVNRLNYPKTHCTRGCEALELVGNGFWSSLAVPEVGN 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32298413 32306937 + Bda033993 Bda07g01725 10615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01725 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 443 IPR001680 GO:0005515
Bda07g01725 838 SUPERFAMILY WD40 repeat-like 12 317 IPR036322 GO:0005515
Bda07g01725 838 SUPERFAMILY WD40 repeat-like 187 728 IPR036322 GO:0005515
Bda07g01725 838 PANTHER WD REPEAT-CONTAINING 5 822 - -
Bda07g01725 838 SMART WD40_4 296 347 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 682 721 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 456 497 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 404 443 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 106 149 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 49 99 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 727 771 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 211 258 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 633 672 IPR001680 GO:0005515
Bda07g01725 838 SMART WD40_4 586 630 IPR001680 GO:0005515
Bda07g01725 838 Pfam WD domain, G-beta repeat 115 148 IPR001680 GO:0005515
Bda07g01725 838 Pfam WD domain, G-beta repeat 405 442 IPR001680 GO:0005515
Bda07g01725 838 Pfam WD domain, G-beta repeat 217 258 IPR001680 GO:0005515
Bda07g01725 838 Pfam WD domain, G-beta repeat 51 98 IPR001680 GO:0005515
Bda07g01725 838 Pfam WD domain, G-beta repeat 303 347 IPR001680 GO:0005515
Bda07g01725 838 Pfam WD domain, G-beta repeat 690 720 IPR001680 GO:0005515
Bda07g01725 838 Gene3D - 176 364 IPR015943 GO:0005515
Bda07g01725 838 Gene3D - 365 521 IPR015943 GO:0005515
Bda07g01725 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 730 IPR001680 GO:0005515
Bda07g01725 838 Gene3D - 2 173 IPR015943 GO:0005515
Bda07g01725 838 PANTHER ELONGATOR COMPLEX PROTEIN 2 5 822 - -
Bda07g01725 838 PRINTS G protein beta WD-40 repeat signature 708 722 IPR020472 -
Bda07g01725 838 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Bda07g01725 838 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Bda07g01725 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Bda07g01725 838 Gene3D - 579 806 IPR015943 GO:0005515
Bda07g01725 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 726 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01725 K11374 ELP2; elongator complex protein 2 - jre:109013148 1262.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01725 Bda-Chr7:32298413 Bda05g01164 Bda-Chr5:59725172 9.83E-06 dispersed
Bda07g01725 Bda-Chr7:32298413 Bda04g00146 Bda-Chr4:3969533 1.17E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30