Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01729 ATGGCTGGCCTTGAAGAACTAAGGAAGAAGCTTGCACCATTATTTGATGCTGAAAAGGGTCTTTCTTTGGATTCATCGTTGGACCCTTCCGCTTCCTACACATTTTCAGATGGTGGAGCTGTTAACTTGTTGAGCAGATCATATGGAGTATACAATATTAACGAGTTTGGATTGCAAAAGTGCTCTTCTTGGCCTGCAGATGATACTGATCATAGTGAAAAGACATACCGATGTGCTTCGCATGAGATGAGAATATTTGGAGTAATCGGTAGTGGTGCTAGTAGTGTTGTGCAGAGAGCTATCCATATTCCCAGTCATAGAATTCTGGCTCTGAAAAAGATCAATATTTTTGAAAAGGATAAAAGGCAACAGCTTCTTACAGAGATAAGGACACTATGTGAAGCGCCATGTTACCAGGGTCTTGTAGAATTCCATGGAGCGTTTTATACTCCTGACTCTGGACAAATCAGTATAGCTTTGGAGTACATGGATGGAGGCTCGTTGGCAGACATATTACGTATGAAAAGGAAAATACCAGAGCCTGTCCTTTCTTCAATGTTCCAAAAGATTCTCCAGGGACTGAGTTACTTGCATGGAGTTAGATATTTAGTCCACAGAGATATAAAGCCAGCTAATCTGCTTATAAATCTCAAGGGTGAGCCAAAAATAACAGATTTCGGTGTAAGTGCGGGGTTAGAGAATTCAATGGCGATGTGCGCGACATTTGTTGGGACCGTTACATACATGTCACCTGAACGGATTCAAAATCAAAATTACTCCTATCCTGCTGACATCTGGAGCCTTGGACTTGCTCTCTTTGAGTGTGGTACTGGAGAATTCCCATATATTGCAACTGAAGGTCCAGTAAATCTGATGTTGCAGATTTTGGATGATCCGTCACCATCGCCACCAAACCACAGCTTTTCACCGGAGTTTTGCTCGTTTGTTGATTCTTGTTTGCAAAAGGATGCAGACGCTAGACCCACTGCCGAACAGTTGCTTGCACATCCATTTATCACAAAGTACGAGGATGCTCAAGTAGACTTGGCAGATTTTGTAAGAAGTGTGTTTGACCCGACACAGAGGTTGAAGGACTTGGCAGATATGCTGGCAATTCATTATTACTTGCTCATTGATGGACCTGATGACGTTTGGCATCACGCGCGAACCTTGTACGATGAACGATCAAATTTCAGTTTCGCGGAGAAGCTCTACGTAGGCCCAAATGACATTTTTGAAACTCTGTCAAATATTCGAAGCACATTAGCGGGTGATTGGCCTCCTGAAAAGCTAGTGCATGTGGTTGAAAAGCTCCAGTGTCGAGCTCACGGAGCGGATGGAGTTGCTATTCGAGTATCAGGATCCTTTATCATCGGGAACCAGTTTCTAGTGTGTGGAGATGGAGTTCAAGTGGAGGGCTTACCCCATTTTAAAGATCTTGCTATCGATCTCGGCTCTCGCAGAATGGGGATGTTCCGCGAGCAGTTTATTATGGAGCCGAGCAGTGTGATTGGTCGATACGTTATTTCGAAACAAGAGCTGTATGTAACCCATCAGTAA 1560 43.59 MAGLEELRKKLAPLFDAEKGLSLDSSLDPSASYTFSDGGAVNLLSRSYGVYNINEFGLQKCSSWPADDTDHSEKTYRCASHEMRIFGVIGSGASSVVQRAIHIPSHRILALKKINIFEKDKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMKRKIPEPVLSSMFQKILQGLSYLHGVRYLVHRDIKPANLLINLKGEPKITDFGVSAGLENSMAMCATFVGTVTYMSPERIQNQNYSYPADIWSLGLALFECGTGEFPYIATEGPVNLMLQILDDPSPSPPNHSFSPEFCSFVDSCLQKDADARPTAEQLLAHPFITKYEDAQVDLADFVRSVFDPTQRLKDLADMLAIHYYLLIDGPDDVWHHARTLYDERSNFSFAEKLYVGPNDIFETLSNIRSTLAGDWPPEKLVHVVEKLQCRAHGADGVAIRVSGSFIIGNQFLVCGDGVQVEGLPHFKDLAIDLGSRRMGMFREQFIMEPSSVIGRYVISKQELYVTHQ 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32401743 32406474 - Bda028635.1 Bda07g01729 10619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01729 519 Pfam Protein kinase domain 86 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g01729 519 CDD PKc_MAPKK_plant_like 84 343 - -
Bda07g01729 519 SUPERFAMILY Protein kinase-like (PK-like) 85 358 IPR011009 -
Bda07g01729 519 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Bda07g01729 519 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g01729 519 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Bda07g01729 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Bda07g01729 519 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Bda07g01729 519 PANTHER - 2 517 - -
Bda07g01729 519 Gene3D - 364 517 - -
Bda07g01729 519 Gene3D Transferase(Phosphotransferase) domain 1 165 363 - -
Bda07g01729 519 Gene3D Phosphorylase Kinase; domain 1 59 164 - -
Bda07g01729 519 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda07g01729 519 SUPERFAMILY NTF2-like 364 514 IPR032710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01729 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csin:114272195 885.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00383 Bda-Chr2:44203814 Bda07g01729 Bda-Chr7:32401743 1.37E-68 dispersed
Bda07g01729 Bda-Chr7:32401743 Bda11g01036 Bda-Chr11:10100335 6.07E-72 dispersed
Bda07g01729 Bda-Chr7:32401743 Bda01g02038 Bda-Chr1:56647120 1.06E-70 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda02g00383 CCT 27 338 MAP Kinase Kinase Gene Family AT4G26070 66.1 2.0e-123 439.1
Bda11g01036 CCT 3 334 MAP Kinase Kinase Gene Family AT4G26070 61.7 1.0e-119 426.8
Bda01g02038 . 4 340 MAP Kinase Kinase Gene Family AT4G26070 55.0 2.9e-103 372.1
Bda02g00383 CCT 1 312 MAP Kinase Kinase Gene Family AT4G29810 65.8 1.2e-125 446.4
Bda11g01036 CCT 4 307 MAP Kinase Kinase Gene Family AT4G29810 66.1 8.7e-116 413.7
Bda01g02038 . 5 314 MAP Kinase Kinase Gene Family AT4G29810 59.0 1.9e-102 369.4
Bda07g01729 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 6.2e-227 783.5
Bda11g01809 . 5 314 MAP Kinase Kinase Gene Family AT1G51660 52.0 7.8e-86 314.3
Bda11g01809 . 43 312 MAP Kinase Kinase Gene Family AT3G21220 56.3 1.1e-84 310.5
Bda01g02038 . 3 344 MAP Kinase Kinase Gene Family AT5G56580 82.5 2.2e-157 552.0
Bda11g01036 CCT 6 322 MAP Kinase Kinase Gene Family AT5G56580 59.6 4.1e-108 388.3
Bda02g00383 CCT 7 327 MAP Kinase Kinase Gene Family AT5G56580 57.0 2.7e-107 385.6
Bda11g01809 . 1 310 MAP Kinase Kinase Gene Family AT1G18350 62.6 1.9e-109 392.5
Bda11g01809 . 1 313 MAP Kinase Kinase Gene Family AT1G73500 65.5 8.5e-118 420.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69742 PF00069 Pkinase 1.10E-59 CL0016 Bda PK