Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01736 ATGTTTGGGGAGAAGGGTCTTTCTAATGCCCTTTCATCTGAGGCTGCTGAGCAGTCTCAGAGCAAGCTCTCTCGCCATATTACTCAACGTAATAGGGATCTACATGCGGAAAAAATTGGGGTTTCTGAGAAAAACGTGAGTCACTTGAGAGAATCTGATATGGGTGCTCATGGGTTTCCATTAAAACCCTTGAAAATCGCTCATTCAGGCTCCCAGGAGCTTACTTTCAGCTACCTGTGTGATAATTCCAAATCGGGTTTTCTTGAGAGAGATCTTCCTGGCAGAAATTCTTCGGAGAAAGTTAGCTACAAAGGCAAAGAATTTGTCACTGCTGATAGTTTTAACGGCGATAACAAATGGGTAGAGAGGGATTTCCTGAATTTAAACGAGAAGAGAGAGAATTCGTCGAAACGGGAAGTTGCAGAAGATGTTGATAGAGGAAACAGAGAAAAGAAGCCAAAGCTCGAGACTCTTAATCTGTCACTCGCTTTGCCCGATCCTTCTCTTTCTCTCACTGCTTCGAACGCCCTGCAAAACGAAGATCTGGCAGCTCGATCCAAACCTACCAGGAGCTTGCAGTCTTTAGCCCCATCAAACAACAACACTAAAACCACATGTTCTAATGATTTTACTGCTGCTTCACTTTCTTACTCGTATTCCCATCCATTTTCCCACAATCCCAGTTGTTCTTTGACGCATAATTCAACTGAGCATTATGAGTGTTCGGCTGGTAGAGATGAGCAGATTTGGAATTGCGGAGAGGGGACAAATGGGTCTGTTCATAGTCGGTTTAAACCATTGGGAGATGGAGTCACTTTATCCAATCATGGCGGTAGTCTTTTCTCGATGATGCAGGGTAATCGTATGATGAACAAGGATTCCCAAAATAATCATAATTTACCGACAAGTTCGGAGAACCATTCGTTTCTTCCTTCTGAACTGCCTGCTAGACTAAGGATTGAAACACCATCTGGGGATTCAAGAGGAAGGAATTCTGAGAATTTGGTAGGATTGGAGGGTGGAGATGCTGGGAGAGCAAGAAAGCTTTCTAAACCCGAGAGAATTCTACGTGAAATTGTTTTTGAATCAATGCCTACTGTGAGTCAAACAATTCTAGAGCTGACGGCAGAAACACTCTCATCAACAAAGAATTACCTGAAGAATCTCATTGAGATGCCCGAAAATAGAGAGGAGTTAGTGACCCTGCAACGGCAGCTCGGGAGAAGATCAGATTTTTCAAAGGAAAGTCTCTTGAAATGCCAGAGAGAGCATCTGGAAATTTTGGTAGCTATAAAGATGGGACTTGGAAACTTCATTGATGGAAAGACACGCACTTCCATTGCTGATCTTGCAGACATTTTCCTGCTTCTGAGATGCAGAAGCTGCCAAAATGTGGTGCCTGTCGATGACTGTGACTGCAAGATTTGCTCGTCAAATAAAGGATTTTGCAGTTCATGCATGTGCCCTGTGTGTCTGAACTTCGATTGTGCAAACAACACGTGCAGTTGGGTCGGGTGCGATGCGTGCTCTCATTGGTGCCATGCAGCCTGTGGCATTCAGAAGAAATTCATAAGACCGGTTCCAAGCTTGAAGGGAAAGACAGGAACGACCCAGATGCAATTTCACTGCATTGCCTGTGGTCATGCTTCGGAACTGTTTGGTTTTGTTAAGGATGTTTTCATTTACTGTGCTAAGGACTGGGGCCATGAAACCTTGAAATTAGAGGAAGATTATGGCGAAAAGCTTGCTAAATTGAGTGTGGAAACGACAGAGAAGAAGCGGAGGAAGAAAGTCGAGGAGCTGAAAGTGATAGAGAATTCTCATTTTGATTACTGCAATATGAAAAAGAGAATGCAAACTGAAATTACTGGTTTACTGCAAAGAATGGAGGCGACCAAGAAGCAATTGATCTAA 1914 43.47 MFGEKGLSNALSSEAAEQSQSKLSRHITQRNRDLHAEKIGVSEKNVSHLRESDMGAHGFPLKPLKIAHSGSQELTFSYLCDNSKSGFLERDLPGRNSSEKVSYKGKEFVTADSFNGDNKWVERDFLNLNEKRENSSKREVAEDVDRGNREKKPKLETLNLSLALPDPSLSLTASNALQNEDLAARSKPTRSLQSLAPSNNNTKTTCSNDFTAASLSYSYSHPFSHNPSCSLTHNSTEHYECSAGRDEQIWNCGEGTNGSVHSRFKPLGDGVTLSNHGGSLFSMMQGNRMMNKDSQNNHNLPTSSENHSFLPSELPARLRIETPSGDSRGRNSENLVGLEGGDAGRARKLSKPERILREIVFESMPTVSQTILELTAETLSSTKNYLKNLIEMPENREELVTLQRQLGRRSDFSKESLLKCQREHLEILVAIKMGLGNFIDGKTRTSIADLADIFLLLRCRSCQNVVPVDDCDCKICSSNKGFCSSCMCPVCLNFDCANNTCSWVGCDACSHWCHAACGIQKKFIRPVPSLKGKTGTTQMQFHCIACGHASELFGFVKDVFIYCAKDWGHETLKLEEDYGEKLAKLSVETTEKKRRKKVEELKVIENSHFDYCNMKKRMQTEITGLLQRMEATKKQLI 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32516644 32519560 - Bda028644.1 Bda07g01736 10626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01736 637 PANTHER PROTEIN OBERON 3 573 636 - -
Bda07g01736 637 MobiDBLite consensus disorder prediction 1 35 - -
Bda07g01736 637 Pfam PHD - plant homeodomain finger protein 460 575 IPR032881 -
Bda07g01736 637 CDD PHD_OBE1_like 487 546 - -
Bda07g01736 637 PANTHER PROTEIN OBERON 3 1 572 - -
Bda07g01736 637 MobiDBLite consensus disorder prediction 184 204 - -
Bda07g01736 637 MobiDBLite consensus disorder prediction 320 349 - -
Bda07g01736 637 MobiDBLite consensus disorder prediction 11 25 - -
Bda07g01736 637 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 572 IPR004082 -
Bda07g01736 637 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 573 636 IPR004082 -
Bda07g01736 637 Coils Coil 615 635 - -
Bda07g01736 637 MobiDBLite consensus disorder prediction 132 152 - -
Bda07g01736 637 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 370 392 IPR004082 -
Bda07g01736 637 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 424 439 IPR004082 -
Bda07g01736 637 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 567 586 IPR004082 -
Bda07g01736 637 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 409 424 IPR004082 -
Bda07g01736 637 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 450 471 IPR004082 -
Bda07g01736 637 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 494 514 IPR004082 -
Bda07g01736 637 Pfam Coiled-coil region of Oberon 572 626 IPR032535 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01736 - - - pper:18789922 785.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01736 Bda-Chr7:32516644 Bda10g00713 Bda-Chr10:41501198 2.65E-07 dispersed
Bda07g01736 Bda-Chr7:32516644 Bda07g01740 Bda-Chr7:32665142 1.97E-32 proximal
Bda10g01205 Bda-Chr10:46024419 Bda07g01736 Bda-Chr7:32516644 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39