Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01782 ATGCCCTACTTAACGGAACAATGGGGAGATTTGCCGTTTAAAGTTGACGATGAAGAGGACATGATCGTCTTTAACTCTCTCTACGATGCCGTTTCTTGTGGATGGTCACCTCTGGATTCGACCACACCCTCCACCACCGTGAAGAAAGAGATTACGGAGGAAGAATCGGAGCCTGGTCCCACTGAGCCGGCGACAGGGCGGCGATACAGAGGGGTCAGAAGACGGCCGTGGGGGAAATTTGCTGCTGAGATAAGAGATTCGGCGAGGAACGGGGCGAGAGTCTGGCTCGGCACTTATCAAACGGCTGAGTGTGCAGCTTTAGCTTATGATCGAGCCGCTTACCGAATGCGTGGCTCGAAAGCTTTGCTTAATTTTCCAAACCGCATTTCGATTGACGAGCCAGAGCCGGAGAGAGTTAAGGGTAAGCGCAAAAACCCGGTGCCGGGCCCGGCGTCGAGTGCCGGCCGGAGAAGCTGCTCAGCTAAGAAAATCAAAGGCTCGCCGGAATCTACGAGTGAAATGGGAGGTTATCAAATGCGTATCAGTGCACCTATAAGATAG 561 53.12 MPYLTEQWGDLPFKVDDEEDMIVFNSLYDAVSCGWSPLDSTTPSTTVKKEITEEESEPGPTEPATGRRYRGVRRRPWGKFAAEIRDSARNGARVWLGTYQTAECAALAYDRAAYRMRGSKALLNFPNRISIDEPEPERVKGKRKNPVPGPASSAGRRSCSAKKIKGSPESTSEMGGYQMRISAPIR 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33680448 33681008 - Bda028713.1 Bda07g01782 10672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01782 186 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Bda07g01782 186 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Bda07g01782 186 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Bda07g01782 186 PANTHER DNA-BINDING DOMAIN 1 58 IPR044808 GO:0003700|GO:0009873
Bda07g01782 186 MobiDBLite consensus disorder prediction 41 68 - -
Bda07g01782 186 MobiDBLite consensus disorder prediction 132 186 - -
Bda07g01782 186 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Bda07g01782 186 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Bda07g01782 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 1 58 - -
Bda07g01782 186 Gene3D AP2/ERF domain 67 128 IPR036955 GO:0003700|GO:0006355
Bda07g01782 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 42 164 - -
Bda07g01782 186 PANTHER DNA-BINDING DOMAIN 42 164 IPR044808 GO:0003700|GO:0009873
Bda07g01782 186 CDD AP2 76 127 IPR001471 GO:0003700|GO:0006355
Bda07g01782 186 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01782 Bda-Chr7:33680448 Bda08g00598 Bda-Chr8:6108808 1.17E-55 dispersed
Bda07g01782 Bda-Chr7:33680448 Bda07g01785 Bda-Chr7:33731127 8.16E-64 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16203 PF00847 AP2 6.80E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01782 K09286 K13432 sspl:121742541 198.364