Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01843 ATGGGAAGAGGAAGAGTGGTGTTGGAGAGGATAGAAAACAAAATCAATCGGCAGGTTACCTTCTCAAAGAGGAGAAATGGGTTGCTGAAGAAAGCTTACGAGCTTTCTGTTCTTTGCGATGCTGAAGTTGCCCTAATCATCTTCTCCAGCCGTGGTAAACTCTTTGAATTTGGCAGCAATGACATGAACGCAATCCTTGAGAGGTACAGACAATGTTGTTATACTCTACGAGGAAACGATGTTACTGATGATGACTCACAGGCCATGTGTCAAGAGGTCTCGAGATTAAAAGCGAAATATGAATCGCTTCAACTTTTGCAAAGGCGATTTCTGGGAGAAGATCTTGCCTCAATAAATCTAAAAGAGTTGCAAAATATTGAGAAACAGCTTGACAAAACTCTAGCGCTAGCTAGACAGAGAAAGGTATCATTCTACTATGTATTATTGATAGAAGCAGAAGGATAA 465 40.65 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFEFGSNDMNAILERYRQCCYTLRGNDVTDDDSQAMCQEVSRLKAKYESLQLLQRRFLGEDLASINLKELQNIEKQLDKTLALARQRKVSFYYVLLIEAEG 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35769626 35771652 + Bda028808.1 Bda07g01843 10733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01843 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda07g01843 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda07g01843 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda07g01843 154 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda07g01843 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda07g01843 154 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda07g01843 154 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Bda07g01843 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda07g01843 154 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bda07g01843 154 Coils Coil 120 140 - -
Bda07g01843 154 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Bda07g01843 154 Pfam K-box region 83 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda07g01843 154 ProSiteProfiles K-box domain profile. 86 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda07g01843 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
Bda07g01843 154 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01843 Bda-Chr7:35769626 Bda11g00336 Bda-Chr11:3774502 1.05E-49 dispersed
Bda14g00891 Bda-Chr14:6915385 Bda07g01843 Bda-Chr7:35769626 1.84E-47 dispersed
Bda08g00226 Bda-Chr8:2229689 Bda07g01843 Bda-Chr7:35769626 2.39E-66 transposed
Bda05g00042 Bda-Chr5:2762199 Bda07g01843 Bda-Chr7:35769626 5.66E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16204 PF01486 K-box 1.90E-17 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01843 K09264 - qsu:112034717 216.083