Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda07g01877 | ATGGACAACTTTTCGAATTTTTATGAGATGTTCTCTTTTGGGTCGCCGGTTTGTTTGCCGGAAGTGTCAAGCTCCGAGAGCAGTACTTCTAAGGGGGCGAATTTTTCCGACGAGGAGGTAATGTTGGCGTCAAAGCATCCGAAGAAGAAGGCGGGGAGGAAGAAGTTTAAAGAGACGAGGCACTTGGTTTACAGAGGAGTGAGAAGAAGAAATTCCGGCAAGTGGGTGAGTGAGGTGAGAGAGCCCAACAAGAAGTCCAGGATTTGGTTGGGGACTTTTCAGACAGCCGAAATGGCGGCTCGGGCACATGATGTGGCGGCACTAGCCCTGAGAGGCCGGTCTGCTTGTCTGAATTTCGCCGACTCCGTTTGGCGGCTGCCCGTGCCGGATTCCGCCACCCCCAAGGACATTCAAAAGGCAGCAGCAGAAGCGGCAGAGATGTTCCGACAGGCGGAGTCCGATGTGTTGAGTTTGGACGATTCGACACCGGAAATGTCAAAAACTTGCAGCAAAACGTCAGCCATTGTTGACGAAACGACGGCGGAGACATCACCAAACTGGTGGGTTTTGGACGAGGATGAGGTTTTCAGTATGCCTGGACTGCTGATGAACATGGCGGAGGGAATGTTGTTGCCGCCGCCACAGTGTGCGGTAGATGCTGACGTGGGATTCGAGACTGACGTGGCATTATGGAGTTATTCATTTTAA | 708 | 52.26 | MDNFSNFYEMFSFGSPVCLPEVSSSESSTSKGANFSDEEVMLASKHPKKKAGRKKFKETRHLVYRGVRRRNSGKWVSEVREPNKKSRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSVWRLPVPDSATPKDIQKAAAEAAEMFRQAESDVLSLDDSTPEMSKTCSKTSAIVDETTAETSPNWWVLDEDEVFSMPGLLMNMAEGMLLPPPQCAVDADVGFETDVALWSYSF | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 36182782 | 36183489 | - | Bda028849.1 | Bda07g01877 | 10767 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda07g01877 | 235 | MobiDBLite | consensus disorder prediction | 24 | 55 | - | - | |
Bda07g01877 | 235 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 23 | 234 | IPR045277 | GO:0003700 | |
Bda07g01877 | 235 | SMART | rav1_2 | 63 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Bda07g01877 | 235 | CDD | AP2 | 64 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Bda07g01877 | 235 | Gene3D | AP2/ERF domain | 63 | 121 | IPR036955 | GO:0003700|GO:0006355 | |
Bda07g01877 | 235 | ProSiteProfiles | AP2/ERF domain profile. | 63 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Bda07g01877 | 235 | SUPERFAMILY | DNA-binding domain | 63 | 122 | IPR016177 | GO:0003677 | |
Bda07g01877 | 235 | PRINTS | Ethylene responsive element binding protein signature | 86 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Bda07g01877 | 235 | PRINTS | Ethylene responsive element binding protein signature | 64 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Bda07g01877 | 235 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 23 | 234 | - | - | |
Bda07g01877 | 235 | Pfam | AP2 domain | 63 | 112 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda06g00071 | Bda-Chr6:732342 | Bda07g01877 | Bda-Chr7:36182782 | 8.38E-42 | dispersed | |
Bda07g01877 | Bda-Chr7:36182782 | Bda15g00742 | Bda-Chr15:10900169 | 6.72E-84 | dispersed | |
Bda15g00741 | Bda-Chr15:10894917 | Bda07g01877 | Bda-Chr7:36182782 | 2.02E-38 | dispersed | |
Bda07g01877 | Bda-Chr7:36182782 | Bda07g01878 | Bda-Chr7:36188859 | 2.33E-19 | tandem | |
Bda06g00662 | Bda-Chr6:9261373 | Bda07g01877 | Bda-Chr7:36182782 | 5.60E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16206 | PF00847 | AP2 | 7.90E-14 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda07g01877 | - | K09286 | nnu:104612692 | 268.855 |