Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01895 ATGGAGACGCCACTGCTGAACGGTGTTGCCGAAGGTGATTATGCGCCGGTGAGGAGCCTGAAGCAGGCGAGGGAGATGTTTTGGGCAGAGACGGTTAAGCTATGGAGGATTGGAGGACCTATTGCTTTCACTATACTTTGTCAGTACGGAACCAACTCTCTCACTAGTATTTTCGTCGGCCATATCGGAGATATTGAGCTCTCTTCCGTCTCCATTTCTCTCTCCGTCATCGGAACTTTCTCCTTTGGCTTCCTGCTTGGAATGGGTAGTGCATTGGAGACCCTTTGTGGGCAAGCATTTGGAGCTGGAAAAGTTCATTTACTCGGAATCTACATGCAGAGATCGTGGATAATCTTATTCGTCACTTGCTTAATTCTCCTACCAGTTTACATCTGCGCCACTCCGATTCTCATCGCGCTCGGACAAGACAGATCGATCGCGGATTTAGCCGGAAAATTCACAATCTTAGTAATCCCTCAACTTTTCTCTCTTTCCATCGGATTTCCCACCCAGAAATTCCTCCAAGCTCAGAGCAAAGTCAACATGATTGCAACGATTGGCTTCTGCGCCCTGCTTCTTCATGTCTTGATGCTCTGGCTCTTCATTTATGTGTTCAAATGGGGCACAACCGGCGCCGCCGTGGCCTATGATATCACCAATTGGCTGATTGCTTCTTCCCAAGTTGTTTATGCTGTGGGTTGGTGTAAAGATGGGTGGACTGGCCTTTCTTGGTCTGCTTTCAGAGAGATTTGGGCCTTTGTTAGGCTCTCTATCGCCTCTGCTGTCATGCTTTGTTTGGAAATTTGGTATATGATGAGCATTATTATTCTCACTGGACATCTCGACAATGCCGTCATCGCATTTTGTTTCTTTTTGAAGTTTATAATTGGAAATTTTTGTTTTTGCAGTATGAATATCAATGGAATTGAGGCCATGATTTTTATTGGAATAAATGCTGCCATAAGTGTCCGGGTCTCGAACGAGCTCGGCCTCGGCCATCCGCGAGCTGCGAAATATGCCGTCTACGTGACGGTTCTTCAGTCTCTTCTCATCGGAATATGTTGCATGATTGTCATTTTGTCAACAAAAAACTACTTCTCTGTTATTTTCACGAGTAGTAAAAAGATGGAAGTAGCCGTTTCTCACCTCGCATTTCTTCTCGGCATAACAATGGTTCTCAATAGCGTTCAGCCCGTTATTTCTGCTAACTTCATTTATTTTTGGGTTATAATTGTAGGAGTTGCCATTGGAGGAGGATGGCAAGCTATGGTTGCGTATATTAACCTAGGGTCGTACTACATTATCGGACTCCCCCTTGGATATCTGCTCGGATACAAAGCGAATTTAGGCGTGAAGGGACTTTGGGGAGGAATGATATGTGGAACTGGTTTACAAACCATAGTGCTTCTGAATGAAGACGGAACAAAAGTAGAATACAGGGTTTGGAACCCTTTCCGTTCAAAGTTGGCAGCTGCTGTTCTTGGTGGTGTTGACAACATCTGGATTAAACCTGGTGCCCGGGTTCTTTATCTTGGAGCTGCTTCAGGCACAACTGTATCTCACGTGTCTGATGTTGTGGGCCCGACTGGTGTGGTGTATGCTGTGGAGTTTTCACACAGAAGTGGTAGAGACTTGGTAAACATGGCAAAGAAGCGAACTAATGTTATACCTATCATTGAAGATGCTAGACATCCTTCCAAATATAGAATGTTGGTTGGAATGGTGGATGTCATTTTTTCTGATGTCGCACAGCCTGATCAGGCAAGGATTTTAGCTCTCAACGCCAACTGCATAGACTCAACAGTCCCGGCAGAGGCAGTGTTTGCCAGTGAAGTGAACAAGCTCAAAGCTGATCAGTTCAAGCCATCCGAGCAAGTGACTCTTGAGCCATTTGAGCGGGATCACGCATGTGTTGTAGGTCTCTACCGTGCTCCGAAGAAACAGAAAGGTGCTGCCTAG 1959 45.69 METPLLNGVAEGDYAPVRSLKQAREMFWAETVKLWRIGGPIAFTILCQYGTNSLTSIFVGHIGDIELSSVSISLSVIGTFSFGFLLGMGSALETLCGQAFGAGKVHLLGIYMQRSWIILFVTCLILLPVYICATPILIALGQDRSIADLAGKFTILVIPQLFSLSIGFPTQKFLQAQSKVNMIATIGFCALLLHVLMLWLFIYVFKWGTTGAAVAYDITNWLIASSQVVYAVGWCKDGWTGLSWSAFREIWAFVRLSIASAVMLCLEIWYMMSIIILTGHLDNAVIAFCFFLKFIIGNFCFCSMNINGIEAMIFIGINAAISVRVSNELGLGHPRAAKYAVYVTVLQSLLIGICCMIVILSTKNYFSVIFTSSKKMEVAVSHLAFLLGITMVLNSVQPVISANFIYFWVIIVGVAIGGGWQAMVAYINLGSYYIIGLPLGYLLGYKANLGVKGLWGGMICGTGLQTIVLLNEDGTKVEYRVWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPSKYRMLVGMVDVIFSDVAQPDQARILALNANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGLYRAPKKQKGAA 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36346113 36356694 - Bda028868.2 Bda07g01895 10785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01895 652 PRINTS Fibrillarin signature 585 614 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bda07g01895 652 PRINTS Fibrillarin signature 555 584 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bda07g01895 652 PRINTS Fibrillarin signature 530 547 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bda07g01895 652 PRINTS Fibrillarin signature 505 526 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bda07g01895 652 PRINTS Fibrillarin signature 478 497 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bda07g01895 652 ProSitePatterns Fibrillarin signature. 530 544 IPR020813 GO:0003723|GO:0006364|GO:0008168
Bda07g01895 652 CDD MATE_eukaryotic 30 470 IPR045069 GO:0042910|GO:1990961
Bda07g01895 652 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 474 641 IPR029063 -
Bda07g01895 652 Gene3D Vaccinia Virus protein VP39 483 644 IPR029063 -
Bda07g01895 652 PANTHER PROTEIN DETOXIFICATION 12 467 - -
Bda07g01895 652 SMART Fibrillarin_2 451 644 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bda07g01895 652 TIGRFAM matE: MATE efflux family protein 40 455 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda07g01895 652 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda07g01895 652 Pfam MatE 260 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda07g01895 652 Pfam Fibrillarin 475 643 IPR000692 GO:0003723|GO:0006364|GO:0008168
Bda07g01895 652 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01895 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - pvy:116139562 693.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01895 Bda-Chr7:36346113 Bda01g00445 Bda-Chr1:31442279 7.39E-149 dispersed
Bda13g00341 Bda-Chr13:4278175 Bda07g01895 Bda-Chr7:36346113 0 transposed
Bda05g00085 Bda-Chr5:4049552 Bda07g01895 Bda-Chr7:36346113 3.40E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g741 . . . Bda07g01895 Bpe03g00147 . . . . . . . . Car15g00995 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01381 . . Blo09g00070 . . . . . . . . . . . . . . Cpe13g00267 Bhi12g00020 . . . . . Lcy12g0048 . . . . . . . Lsi09g00087 . . Cme09g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000562 2 4 7 5 5 3 4 3 3 4 3 3 4 3 4 4 3 5 4 3 3 5 3 3 3 3 3 3 3 3 108