Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01906 ATGGCGGATGATTGGGATCTGTACGCTGTAGTTCGCAGCTGTAAAGCCACAGCCACAAAGGCAGCCGCCATTAAAGCTCCAGAAGAAGCTTTCTCTAGCTTGGAGGCTTTTCTTTTAGAAGAAGAAGAAGAAAAAAAGTTTTCTTTTCCTAATCTCTTGGAGCAGACAACCAATGGATTTCAAGAATTACATCAACTCTGCCAGCCTTTTCTCTCCAAGACCACCTCCATTAACGAGCTAGAAACCTTGAATTCAAGCTTGAATTTACAGAAATACAATCAGTCTGTAAATTCACCTTCTGCTTTAATGAAACAGAAAGAAGAAGAAGAAGACGCTAAGCAGAAATCGCAGAATCAGCCAGATTTAGATTGCTCACCCACCTCGCAGCCTCAAACCCCTAGAACAAGACGAAGGAAATTGCAGCAGGAGCGAATTGTATGCCAAGTAACAGCCGATAATCTCTCTACAGACATGTGGGCATGGCGGAAATACGGGCAGAAGCCCATTAAAGGCTCTCCACATCCAAGAAACTATTATCGTTGCAGCAGTTCCAAAGGGTGCTCAGCGAGAAAGCAAGTGGAGAGATCCACTTCCAACCCGAACACCTTCACCATAACCTACACCGGCGAACACACTCACCCTCCTCCGCTTCACAAGAATTCGCTCGCCGGAAGTACCAGGAACAAGATTGCGGCGATCGAGACAACAGCCGCCGTGGCCAGCACTGCTTCTAGCTCTTCCCCAAGCGGTCTTTCTCCCACCACACCATTTTCAGTGGAGAACGAGGAAGAATCTATCAAAGAGACGTCCAATTGCGAAGAAAAGGGGGCCGATGAAATAGCTTTCAGTGAAGACGATAAAGACATTCTGATACCGAACATGGCGGTGATGGAGAATGATATCTTCTTAGGCCCTGAAGGGTTTGACTACGACGGAGTTGGCCGCACTCGGGCCACCGGCGAAAAGTTGACTAGTCCTAAGCCTCCCTGGAATCCAGGTAGCTCTACTTCCGCCGGAGCTACTGCGAGTGGTGGTTCCTGGAAGTCGCCTCCTCAATTCGCCGGTAGATGA 1071 48.37 MADDWDLYAVVRSCKATATKAAAIKAPEEAFSSLEAFLLEEEEEKKFSFPNLLEQTTNGFQELHQLCQPFLSKTTSINELETLNSSLNLQKYNQSVNSPSALMKQKEEEEDAKQKSQNQPDLDCSPTSQPQTPRTRRRKLQQERIVCQVTADNLSTDMWAWRKYGQKPIKGSPHPRNYYRCSSSKGCSARKQVERSTSNPNTFTITYTGEHTHPPPLHKNSLAGSTRNKIAAIETTAAVASTASSSSPSGLSPTTPFSVENEEESIKETSNCEEKGADEIAFSEDDKDILIPNMAVMENDIFLGPEGFDYDGVGRTRATGEKLTSPKPPWNPGSSTSAGATASGGSWKSPPQFAGR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36505363 36506614 + Bda028880.1 Bda07g01906 10796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01906 356 Pfam WRKY DNA -binding domain 157 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda07g01906 356 MobiDBLite consensus disorder prediction 328 348 - -
Bda07g01906 356 MobiDBLite consensus disorder prediction 118 135 - -
Bda07g01906 356 Gene3D WRKY domain 141 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda07g01906 356 MobiDBLite consensus disorder prediction 240 260 - -
Bda07g01906 356 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 306 IPR044810 GO:0003700
Bda07g01906 356 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 306 - -
Bda07g01906 356 MobiDBLite consensus disorder prediction 261 284 - -
Bda07g01906 356 SUPERFAMILY WRKY DNA-binding domain 151 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda07g01906 356 MobiDBLite consensus disorder prediction 240 284 - -
Bda07g01906 356 MobiDBLite consensus disorder prediction 103 117 - -
Bda07g01906 356 MobiDBLite consensus disorder prediction 305 356 - -
Bda07g01906 356 MobiDBLite consensus disorder prediction 99 143 - -
Bda07g01906 356 SMART WRKY_cls 155 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda07g01906 356 ProSiteProfiles WRKY domain profile. 150 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01906 K13425 WRKY22; WRKY transcription factor 22 - qsu:111994510 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00571 Bda-Chr3:4780283 Bda07g01906 Bda-Chr7:36505363 5.82E-69 dispersed
Bda07g01906 Bda-Chr7:36505363 Bda13g00357 Bda-Chr13:4459365 1.27E-54 dispersed
Bda07g01904 Bda-Chr7:36452845 Bda07g01906 Bda-Chr7:36505363 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g45 . . . . Bpe05g00659 . . . . Cmo16g00630 . . Car02g00702 . . Cpe14g00491 Cpe05g00637 . . . . . . . Cla07g00748 Cam07g0800 Cec07g0865 Cco07g0839 Clacu07g0780 Cmu07g0788 Cre07g1142 . . Cone6ag0812 Cone9ag0811 . . . Cme07g01614 . . Bda07g01906 . . . Bma05g00832 . . Cmo02g01102 Cmo15g01124 . Cma16g00580 . . . . . . . . . . . . . . . . . . . Csa04g00611 Chy07g01200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009671 2 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16209 PF03106 WRKY 3.10E-26 CL0274 Bda TF