Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01913 ATGGCTCAGGTGGTGGCTACGAGGTCCATTCAGACCGCATTCGCGAGTCCCAGTGTTGGATCCATACAGGACCGAGCGGAGAAGCTCAGGCCTTGGAGTTCCAGTGTTGATTTCAAGGTTCTCGTCCGCAAGGAGAAGAGGAGCTCCGGTGTGGCTTTTCGAAGCTCTTGCATTACTGCTAAGAAGGCATCTCAAGCTCAAGTCCTACCTGTTTCGCCTGAGGACGTTCAGAAGACGGAGGAGGAATTTCAGCATTTACGAGAAATCCAACAACTCGGTGACACTTCTGTGGCTATGTGGACCAAGCCATTTGTTAGACGGAAGACAAAAATTGTTTGCACGATTGGTCCCTCAACCAACACGAGGGAAATGATTTGGAAACTGGCTGAGGCTGGAATGAATGTTGCCCGTATGAATATGTCTCATGGAGACCATGCATCTCATCAAAAAGTAATTGATTTGGTCAAAGAATACAATGCTCAATCTAAAGACAACTGCATTGCTATCATGCTTGATACCAAGGGCCCTGAGGTTAGAAGCGGTGATCTGCCACAACCGGTCACACTGACACCAGGACAAGAGTTTACTTTCACAATTCGCCGAGGTGTTGGCACTATGGACTGTGTCAGTGTCAACTACGATGATTTCGTTAATGATGTGGAAGTGGGTGACATGCTTCTGGTTGATGGTGGGATGATGGCGTTGATGGTGAAGTCTAAAACAGACGATTCAGTGAAATGCGAAGTAATTGATGGAGGGGAGCTTAAATCTAGGCGACATTTAAATGTACGAGGAAAAAGTGCAACTCTTCCTTCCATTACAGAAAAAGACTGGGATGATATTAAATTTGGAGTTGAGAACGGAGTTGACTTTTATGCCGTTTCGTTTGTTAAAGACGCACAAGTGGTTCATGAATTGAAGAATTATCTTCAAGCCTGTGGCGCTGATATACATGTCATTGTGAAGATTGAAAGTGCAGACTCCATTCAAAATTTGCATTCGATCATCACGGCATCTGATGGGGCAATGGTTGCTAGGGGAGATCTTGGTGCAGAGCTTCCAATCGAAGAGGTTCCACTCCTGCAGGAGGAAATAATTCGGATGTGTCGAACCATGGGGAAGACTGTTATTGTAGCGACGAATATGCTGGAGAGCATGATTGTCCATCCAACGCCAACCAGAGCCGAGGTCTCGGACATTGCCATTGCAGTTCGAGAAGGTGCTGATTCAGTCATGCTCTCTGGAGAAACCGCTCATGGAAAATTTCCATTAAAAGCTGTGAAAGTCATGCACACTGTCTCGTTACGAACTGAAGCGACCATAACTGGTGGTCAAATGCCATTGAATCTCGGTCAAGTCTTCAAGAATCACATGAGTGAGATGTTTGCTTACCATGCCACCATGATGTCTAACACTCTTGGGACAGTCTATCCTTGTTTTCACCCGAACTGGCTTCATGGCTATCCTTCTTAG 1473 45.96 MAQVVATRSIQTAFASPSVGSIQDRAEKLRPWSSSVDFKVLVRKEKRSSGVAFRSSCITAKKASQAQVLPVSPEDVQKTEEEFQHLREIQQLGDTSVAMWTKPFVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARMNMSHGDHASHQKVIDLVKEYNAQSKDNCIAIMLDTKGPEVRSGDLPQPVTLTPGQEFTFTIRRGVGTMDCVSVNYDDFVNDVEVGDMLLVDGGMMALMVKSKTDDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVENGVDFYAVSFVKDAQVVHELKNYLQACGADIHVIVKIESADSIQNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRMCRTMGKTVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADSVMLSGETAHGKFPLKAVKVMHTVSLRTEATITGGQMPLNLGQVFKNHMSEMFAYHATMMSNTLGTVYPCFHPNWLHGYPS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36586383 36590204 + Bda028889.1 Bda07g01913 10803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01913 490 Pfam Pyruvate kinase, barrel domain 107 442 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 Gene3D - 176 271 IPR015806 GO:0004743|GO:0006096
Bda07g01913 490 ProSitePatterns Pyruvate kinase active site signature. 317 329 IPR018209 GO:0004743|GO:0006096
Bda07g01913 490 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 99 441 IPR015813 GO:0003824
Bda07g01913 490 SUPERFAMILY PK beta-barrel domain-like 176 267 IPR011037 -
Bda07g01913 490 PANTHER PYRUVATE KINASE 38 477 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 Gene3D - 107 437 IPR040442 -
Bda07g01913 490 PRINTS Pyruvate kinase family signature 319 345 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 PRINTS Pyruvate kinase family signature 415 431 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 PRINTS Pyruvate kinase family signature 289 303 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 PRINTS Pyruvate kinase family signature 165 181 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 PRINTS Pyruvate kinase family signature 346 370 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 PRINTS Pyruvate kinase family signature 396 414 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 PRINTS Pyruvate kinase family signature 371 395 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bda07g01913 490 PANTHER PLASTIDIAL PYRUVATE KINASE 2 38 477 - -
Bda07g01913 490 Gene3D - 438 471 IPR036918 -
Bda07g01913 490 TIGRFAM pyruv_kin: pyruvate kinase 107 445 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01913 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - zju:107414649 796.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01913 Bda-Chr7:36586383 Bda09g00699 Bda-Chr9:11061709 3.26E-114 dispersed
Bda07g01913 Bda-Chr7:36586383 Bda07g00111 Bda-Chr7:1348372 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72