Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01915 ATGGAGGCCACATCCTATTTGTTTTGTGGGGATTCTGATTGTATCAATAGAGAAGGAGGGGCATGTAGTTCTAGTTTTGACTATCTGGCTAATCCCTCTTCATGCATTTATCAAGCAATTGTCGTGTTCTTCAATGTTGTTCTTTTACTTGTGCTCGTGTTAGTAATGCTGAGGAGGAAATCATCGGTTTATATGTCTACCATTCGATTCCATAACCATTCGAATTGGGAAATTTGTGTAGTGCTTTTCAATGTGTGTCTCGGATTGACATATGTGGGCTTGGGAGTTTTGAAATTAGAAGAAAGTTGGAGGAAAATGCACACTGCTCTGCCTCTGAGTTTATGGTTCTCGATGATTTTTCAGGGTTTGACTTGGATTCTGTTAAATATAATCATAATTACTCGAGGCAAACAGCTTCCGGGAGCGATTCTTCGCCTTTTGTCTGTGCTTGCAGTTGCATTTTCTGCCATAATTTGTGCTTTATCACTGGCTTCTTTCATGGCCAGCAAGGTTTTATCATTGAAGATAGCTTTGAATGTTTTATCTTTTCCAGGAGCTTTTCTCTTGATGATTTTCACTTATAAGATGTCCAAATTTGAAGCCAGTGAGTTGAGTTTGGAGGAAAAGGACCTCTATACGCCTTTGAATGGCGAGGTGAATAGAACTAGCACTATAGATCCTGTCACTCCGTTTGCAAAGGCCGGATTCTTTAGCCAAATGTCGTTTTGGTGGTTGAATTCTTTGATGAAAAGAGGAAGAGAAAAAACTCTTGAGGACAAAGATATTCCTAAACTACGCCAAAACGATCGAGCAGAGAGTTGTTATATGAAGTTCTTAGAAAAATTGAACAATCAAAAACAAATAGAACCATCTTCGCAGCCGTCGATCTTGAGGACGATAATCCTATGCCATTGGAAGGAGATTTTACTATCCGGGTTCTTTGCACTTTTGAAGATTCTCACTGTCTCTGCAGGTCCTCTTCTTCTCAATGCCTTCATTTCAGTTGCAGAAGGAAAATCGAGCTTTAAATATGAAGGCTATGTTCTTGCTGTGTCTCTTTTTCTCTCGAAGAGCATCGAATCCTTATCGCAAAGACAGTGGTATTTTAGGAGCAGGCTTATAGGTCTTCAAGTCAGGTCTTTACTCACAGCTGCCATTTACAAGAAGCAATTGAAATTATCAAATGCTGGAAAGTTGATCCATTCAGGAGGTGAGATTATGAATTATGCGACAGTCGATGCCTATCGAATCGGAGAATTCCCATATTGGTTCCATCAAACTTGGACGACAAGCCTGCAGCTCTGCATTGCACTTGCAATTCTATTCCGTGCCGTTGGGTTGGCGACGATTGCAGCTTTAATCACGATTGTTCTATGCGTTCTTTGCAATGCCCCCATCGCTAAATTGCAGCTCAAATATCAGACCAAGCTCATGCTGGCCCAAGACGAGAGGTTGAGAGCTTGTAATGAAGCTCTTATCAACATGAAAGTTCTTAAATTATATGCATGGGAGACTCATTTCAAACAAGCGATCGAGAAATTGAGGAAAAATGAGTGTAAATGGTTGTCAGGAGTGCAGCTTCGAAAGTCTTATAATGGCTTTCTCTTTTGGACATCTCCTGTTTTGGTTTCAACTTTCCTTAAAGTTCCTCTATATGCAAGTAATGTTTTCACCTTTGTTGCTACTTTACGGCTTGTTCAAGACCCGATTCGATCTATCCCTGATGTCATTGGAGTTGTCATTCAAGCTAAAGTTTCATTTGCTCGTATTTTGAAGTTTCTAAAGGCCCCTGAGCTCATAGCACAACTGCTCGCCAAAAGTGGAACTGCAGAGAGTTTAAGCCATGCCGTTTTCATAAACTCAGCAGATTTTTCGTGGGAACAGAATTCCCCTAGGCCGACACTTAGGAATATTGATTTGGTCGTCAGGCCAAGCGAAAAGGTAGCTATCTGCGGCGAAGTTGGCTCAGGGAAATCGACTCTTCTTGCAGCGATTCTCGGTGAAATTTCAAAATTTAAAGGGGAAATTCAAGTTTATGGGAAGATAGCTTATGTTTCTCAAACGGCATGGATTCAAACGGGGACAATACAAGACAACTGTTCGTTGGTAAAGGATCTCGAGTCGTTTCCTTATGGCGATCTAACCGAAATAGGAGAAAGAGGAGTGAATCTTAGTGGTGGTCAAAAGCAGCGGATTCAACTTGCTCGAGCTCTATATCAAGATGCTGACATTTACCTCCTGGATGATCCGTTTAGTGCCGTTGATGCTCATACTGCGACGAATTTGTTCAATGATTACGTTATGAAAGCACTTTCGGAAAAGTCTGTTCTGCTTGTGACCCATCAAGTTGATTTCCTACCGACATTCGATTCTGTTTTGTTAATGTCAGATGGAGAAATTCTACAAGCTTCTTCCTACCATCAATTATTAGCTTCAAGTAAAGAATTCCAAGAACTAGTCAATGCACACAAGGAGACTGTATCCTCTGATCTAAGTGTGGTCGATCTCGATGTGCCATTCGCTTTTGTTTGGGCCATTGGGGCCACCATTAATGCTTATGCAGGTCTTGCAGTGTTAGCTGTCGTAACGTGGCAAGTTCTCTTCGTCTCCATTCCGATGCTTTTTATCTCCATGCGCTTGAAGAGATATTACTTTGCCTCAGCTAAAGAATTGATGCGTATTAATGGCACGACCAATCCTTTCTTCCACAATTTCTCGGCAACCGAGTGGTTGATTCAACGACTAGAAATGCTCAGTGCCACCATTCTTACCTCTGCTGCACTTGCCATGGTTTTGCTTCCTACTGGAACCTTCAGCCCTGGTTTCATTGGAATGGCACTTTCTTATGGACTTTCTCTCAACATGGCTTGGGTTTTTTCCATACAAAATCAATGCACTTTGGCAAATTACATCATCTCTGTTGAAAGACTAAACCAATATATGCATATACCCAGTGAAGCTCCAGAAGTGATCGAACAAAACCGTCCGCCTAGCAGTTGGCCTTCTGCCGGCAAAGTGCAAATACTTGATTTGCAGATTCGATATCGGCCTAATGCGCCTCTCGTTCTTCGTGGGATTAGCTGCACATTTGAAGGCGGTCATAAGATAGGGATCGTCGGCCGGACTGGCAGTGGGAAGACTACTCTTATTGGAGCTCTATTTCGGTTGGTGGAGCCCTGCGTTCTCGGAAAGTGTCAGCTACGAGAAGCGGTGCAAGAGAAAGGTGGCTTGGACTCACCAGTTATGGAAGAAGGTTCAAATTGGAGCATGGGGCAGAGACAGTTGTTCTGTTTAGGCCGCGCCCTCTTGAGAAGAAGTCGTATATTGGTACTCGACGAAGCAACTGCTTCAATCGACAACGCGACCGATATGATTTTGCAGAAAACGATTCGATCGGAATTTGCAGATTGTACTGTAATCACAGTCGCTCATCGGATTCCAACGGTGATGGATTGCACGATGATTCTTGCCATTAGTGATGGTGACATTGTCGAGTATGACGAGCCGAGGAAGTTGATGAAGAGGGAAGATTCACTGTTTGGACAGCTGGTGAAAGAATACTGGTCTCATTCTCAGACAGCTGAATTAATATGA 3594 42.57 MEATSYLFCGDSDCINREGGACSSSFDYLANPSSCIYQAIVVFFNVVLLLVLVLVMLRRKSSVYMSTIRFHNHSNWEICVVLFNVCLGLTYVGLGVLKLEESWRKMHTALPLSLWFSMIFQGLTWILLNIIIITRGKQLPGAILRLLSVLAVAFSAIICALSLASFMASKVLSLKIALNVLSFPGAFLLMIFTYKMSKFEASELSLEEKDLYTPLNGEVNRTSTIDPVTPFAKAGFFSQMSFWWLNSLMKRGREKTLEDKDIPKLRQNDRAESCYMKFLEKLNNQKQIEPSSQPSILRTIILCHWKEILLSGFFALLKILTVSAGPLLLNAFISVAEGKSSFKYEGYVLAVSLFLSKSIESLSQRQWYFRSRLIGLQVRSLLTAAIYKKQLKLSNAGKLIHSGGEIMNYATVDAYRIGEFPYWFHQTWTTSLQLCIALAILFRAVGLATIAALITIVLCVLCNAPIAKLQLKYQTKLMLAQDERLRACNEALINMKVLKLYAWETHFKQAIEKLRKNECKWLSGVQLRKSYNGFLFWTSPVLVSTFLKVPLYASNVFTFVATLRLVQDPIRSIPDVIGVVIQAKVSFARILKFLKAPELIAQLLAKSGTAESLSHAVFINSADFSWEQNSPRPTLRNIDLVVRPSEKVAICGEVGSGKSTLLAAILGEISKFKGEIQVYGKIAYVSQTAWIQTGTIQDNCSLVKDLESFPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATNLFNDYVMKALSEKSVLLVTHQVDFLPTFDSVLLMSDGEILQASSYHQLLASSKEFQELVNAHKETVSSDLSVVDLDVPFAFVWAIGATINAYAGLAVLAVVTWQVLFVSIPMLFISMRLKRYYFASAKELMRINGTTNPFFHNFSATEWLIQRLEMLSATILTSAALAMVLLPTGTFSPGFIGMALSYGLSLNMAWVFSIQNQCTLANYIISVERLNQYMHIPSEAPEVIEQNRPPSSWPSAGKVQILDLQIRYRPNAPLVLRGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPCVLGKCQLREAVQEKGGLDSPVMEEGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMILAISDGDIVEYDEPRKLMKREDSLFGQLVKEYWSHSQTAELI 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36601765 36607599 - Bda028891.3 Bda07g01915 10805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01915 1197 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 827 899 - -
Bda07g01915 1197 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 582 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda07g01915 1197 Pfam ABC transporter 635 751 IPR003439 GO:0005524
Bda07g01915 1197 Gene3D ABC transporter type 1, transmembrane domain 896 1001 IPR036640 GO:0005524|GO:0016021
Bda07g01915 1197 Pfam ABC transporter 1068 1116 IPR003439 GO:0005524
Bda07g01915 1197 SUPERFAMILY ABC transporter transmembrane region 297 590 IPR036640 GO:0005524|GO:0016021
Bda07g01915 1197 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1185 IPR003439 GO:0005524
Bda07g01915 1197 Pfam ABC transporter transmembrane region 309 518 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda07g01915 1197 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 827 899 - -
Bda07g01915 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 822 IPR027417 -
Bda07g01915 1197 CDD ABC_6TM_ABCC_D1 310 590 IPR044746 GO:0140359
Bda07g01915 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1183 IPR027417 -
Bda07g01915 1197 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 71 829 - -
Bda07g01915 1197 Gene3D - 1061 1186 IPR027417 -
Bda07g01915 1197 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1061 1195 - -
Bda07g01915 1197 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 619 822 IPR003439 GO:0005524
Bda07g01915 1197 CDD ABCC_MRP_domain1 619 799 - -
Bda07g01915 1197 Gene3D - 599 834 IPR027417 -
Bda07g01915 1197 SUPERFAMILY ABC transporter transmembrane region 826 986 IPR036640 GO:0005524|GO:0016021
Bda07g01915 1197 Pfam ABC transporter 1023 1059 IPR003439 GO:0005524
Bda07g01915 1197 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524
Bda07g01915 1197 Gene3D ABC transporter type 1, transmembrane domain 280 598 IPR036640 GO:0005524|GO:0016021
Bda07g01915 1197 Gene3D - 1002 1060 IPR027417 -
Bda07g01915 1197 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 900 1060 - -
Bda07g01915 1197 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 71 829 - -
Bda07g01915 1197 SMART AAA_5 644 799 IPR003593 -
Bda07g01915 1197 SMART AAA_5 1032 1170 IPR003593 -
Bda07g01915 1197 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 900 1060 - -
Bda07g01915 1197 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1061 1195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01915 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - qsu:112020205 1118.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01915 Bda-Chr7:36601765 Bda09g00417 Bda-Chr9:5209911 1.05E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g93 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48