Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01929 ATGTCCTCCACGCTGCTCGAGGTGACGCGCGCAGCGCATGAGGAGGTGGAGCGCTTGGAGCGAAACGTGGTGAAGGAGCTCCAGAATGAGCCCGCTTCTAGTCGGGATCGCTTGCTTCAGAGCCATCGAGTGCGGAGTATGATCGACACTATCACTTCTACTACTGAGAAACTTGTTGAGATATACGAGGATAAAGATAATGCGAGAAAGGATGAGATAGGAGCTCTTGGGGGCCAAACTGCAACTGGAACCAACGTGTTTAGTGCATTTTATGATAGGTTGAAGGAGATTCGTGAGTACCACAGAAGGCATCCTGCTGCACGTGTCGTTGATTCAAATGACGACTATGAGATGCAACCTAAAGAGGAGCCACAAATTGAATTCAGCGGAGAGGAAGCATTTGGGCGGTATCTTGACTTGCATGAATTGTACAACGAGTACATCAATTCTAAGTTTGGAGAGCCAATTGAGTATTCTGCTTACCTTGATTTGTTTTCTCAGCCACATAAGATTCCCCATAAACTAAAGTCAACCAAGAATTATAAAGATTATGTGGTGAATCTACTCGAGTATTTAATATACTTTTTCCACCGTACTGAGCCTTTGCAAGATCTTGATAAAATATTTTCCAAGGTCGAAACTGAATTTGATGAGCGATGGGTGAATGGCACAGTGGAGGGGTGGGAGAGTGCTAGTCAAGAAAATGGAAAAATAGCTCAGCATACTGTTATTGATCTTGACTATTACAGCACGATCGACGAGCTGATTGAATTAGGTCCTGAAAAGCTGAAGGAGGCACTGGCTGCATTGGGACTGAAGACAGGTGGTACTGTCCAGCAGCGAGCAGAGAGGCTTTTCCTTACTAAGCATACCGCTCTTGAAATGTTGGATAAGAAACATTTTGCTAAAGTTTCCCGTGGTTCAGAACAAAATGGAGTTCCTGTGGCTTCACAGTGTAACGAAAATTTGAAAGAAGTTGCCTTGATGGAAGCCAAAATTGAAAAACTAAGTGACTTATTGGATGAGACGATTGAGCGAACAAAAGACAACATCGTGAAAAAGCAAGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAGGCTGACACAGATACTGATGATGAGGAGCAACAAATTTATAATCCTCTGAAACTTCCAATGGGTTGGGATGGGAAACCTATACCTTATTGGCTGTACAAACTTCACGGTCTTGGTCAGGAGTTTAAATGTGAGATATGTGGGAACTATAGCTACTGGGGCCGTAGAGCTTTTGAAAGACATTTCAAAGAATGGCGGCACCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTCAATGAAGTCACATCAATTGAGGAAGCGAAAGATTTGTGGAAGAAAATACAGGAGCGGCAAGGAGTGAACAAATGGCGGCCAGATCTTGAAGAAGAGTATGAAGATAAAGAGGGTAACATCTACAACAAGAAGACTTTTACTGATCTCCAGCGCCAGGGATTGATATGA 1527 43.48 MSSTLLEVTRAAHEEVERLERNVVKELQNEPASSRDRLLQSHRVRSMIDTITSTTEKLVEIYEDKDNARKDEIGALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARVVDSNDDYEMQPKEEPQIEFSGEEAFGRYLDLHELYNEYINSKFGEPIEYSAYLDLFSQPHKIPHKLKSTKNYKDYVVNLLEYLIYFFHRTEPLQDLDKIFSKVETEFDERWVNGTVEGWESASQENGKIAQHTVIDLDYYSTIDELIELGPEKLKEALAALGLKTGGTVQQRAERLFLTKHTALEMLDKKHFAKVSRGSEQNGVPVASQCNENLKEVALMEAKIEKLSDLLDETIERTKDNIVKKQALTYEEIEAEREEEETQADTDTDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEVTSIEEAKDLWKKIQERQGVNKWRPDLEEEYEDKEGNIYNKKTFTDLQRQGLI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36795366 36801624 + Bda028909.1 Bda07g01929 10819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01929 508 Coils Coil 352 379 - -
Bda07g01929 508 Coils Coil 9 29 - -
Bda07g01929 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 174 IPR031774 -
Bda07g01929 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bda07g01929 508 Pfam Replication stress response SDE2 C-terminal 224 303 - -
Bda07g01929 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Bda07g01929 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
Bda07g01929 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
Bda07g01929 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Bda07g01929 508 Coils Coil 326 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01929 Bda-Chr7:36795366 Bda13g00384 Bda-Chr13:4771527 6.41E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01929 K12827 - zju:107414800 837.795