Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01930 ATGCCGAGGAGTTCGAGGCACAAGTCAAGCAAGCATAGTTCGAAGGATGTTAAGGATTACCCGGTCTCTGAAAAGGATTCTACTTCTAAGGATAAGAGGAGCAGGGAGGAAGTTGGTCTTAGGGTTCTAAAGGACTCGTCCAGGAAACTTGATTCGAAGGATGCAAAGGATATCTATGTCGCTGGAAATGGAGAACGTTTGGAGGAACATGGGTCTTCAAAGCGCCGCACGGAGAAGGGCGACGATGGAACTACTGATAGGTGGAATGGTGGCGACGACCATGATCAAGGTGAAGCGTTCAACTCTAAGGTTTCTTCAGATTTGAAAAACAAGAGGAAGGATGAGAATGTGGGATTTGTAGGTGATGGTGAGGGGGGAAAGAAGGCTGCAGGGAAAGAAGGAAGGCATCGGGAATCAAGCAGGAAGGAGGCTAGGGAGGATGGTGCTGAGAGGGAAAAGAAAGGAAGAGAAGGAAGAAATGAGAGAACAGTTGACAGTGAAGACTATCGACCGACAAAACAAGTTGAAAATACTGATCGGGACCGGGATCGGAATCGAGATCGGGACTGGGATCGGAATCGAGATCGGGGTCGAGATCTAGAGCGGGATCGTGGACATGATCACGTGGACTATGATGGATCTACTGTTGAAGATCGAAGTAGTAAATACAGGAGTCGAGAAAAGAAAAGATCTTCAGATGGTTGTGATGATTATTCTGATGTTAAATCAATAAGTGTTAGAGTCCGTGGTACTGATGTGGATGTGGAAAAAAAATCATCTAGCATTGATAGAGTTGATTATGATGCTAAGAGAGGAGGATCTCAAGTGCACTCAACTCATACAGATGCATTTATTTCCAATAACAGGCGAAGGAATTCCCCTGGTTCTATTTCATTCGTTAATGCAGATGAATACAGTCACCCTGAATCAGAAGATATGAAATATCGAGACTCTTTGCAAGAACAGGCTTCAAAAGCAAACTATTCGAGGGAGCTCCCTGGTTCTTCAGGACCTCTAGAAAGGGGCTCTAAGTACAGGTCCATAGAGAAACTTACTAAAACAGATGGCGGATATTTCGGCGAGCCTTTCAATGAAAGGTCATCGAGTTCAAAAGCCCTTGACATTGAAGAAACTGGACGAAGGAGTGCGTCTATTGACATGAGAGAATTTTCTAATGTTGAGGATAGAGTCAACCGGGATTTGACTATGGAGAAACCTCTTGTGGATGAATCATCTCAAGCTGAATCATCCTTTTATAGAGTTGGTCTAGGCGGCACATCTTCGTTAGGCCCTCCTGCTTTTAGGAGTGGAGTTGATAGCCCATCTTTTGCTAATTCAGTGGAAGATAACTTCAAAGCCAATTCTGCTGGTCGCTACAGGAGGAATGGTGATCCCAACTCAGGAAGAATGCATGGAAATGCTTGGAGGGGTGTTGCAAACTGGACAGCACCTATGCCAAATGGCTTTATTCCTTTTCAACATGGGCTTCCTCATGGAGGGTTTCAGCCAATGGTGCCTCAGTTTCCTGCGCGACCTCTCTTTGTTAGACCTTTGGAAATTAATCACTCTGGGATGCCTTATCATATTTCTGACGTCGAAAGGTTTTCAAGTCCGTTTCGCCCGTTGGGATGGCCCAATGTTTTAGATGGCTCTGGTCCTTCAAATTTACATGGTTGGGACGGGAGTAATGGTGTTTTCAGGGATGAGCCCCTAGTTTATAGGAGAGCTGAGTGGGACCAGAATGGTCGAGGATGGGAGTCTGGCGCTGTGTGGAAAGGACAAAATGGAGACTTAATAACAGACTTGGCCTCTCCATCTGACAAGGATGATCATGGAGTGCAGGCACATGGAGATACTGGGCCAGTCAATGACGTGTCTCATCCTGAGGATAGTTCTCATGGTGTACTCTTAAAAAAGCCTGCAGATTTTACTTCGAATGCTGCTACTCCCGTGAAAGAAAGTTCTTCTCCTCTGCCAGAACCTGCGTCTGAGAAGGCATTAAGTCGTATTTATCTTTCTAAGATTGAAATTTCAGCCGATCTTACAAGTCCAGAGTTGTATAACCAATGTATGAATCTACTGGAAACTGAACAGTGTTTGATTGCTGATGATGACTTTTCTAGTGTTAAACTGTTCAAGATGGGTGCTAGAGCAGGACTGGGATCTTCTAAAATCATTCGGCCTCCCATAAAAGATTATGTCTTCAAGAAAGCGATGGATCTTTACAAGAAGCAGATGATGAAAGAGAGAGATGTTGTATTTGTAACTAAGGAGGTGGCGGATATCAATTCTCCAACCAATGATAAAATTGTTGGAGAGCAATCCCCCATTGCAGTTGTGGAAAAGAGTGAGAATCCAGTTGCAGTTGCTGATGTTGAAATGACTGAAATTATCAATTCAAAATTAGAAACCAGAGAAGAAGCTGATCAGATAACTGATCTCAACGAGGTTATTCAAGAGCTTGAGGACAATGAGAACCCAGATGAGAAATTAAATCCCAGCTCCCAGAAAATTGACGACATGGCATTTCAGCAGGATGTTAAAACAGAAGGGGGTGGAAATGAATCCCCTTCATTGGCGGGTAATATGCAGGTAGAAACTCCGTCCAGTTTACTTGTTGAAAACGGGATTGACGCGGCAGAGAAGCAGCCGGATGGTGATTCAATGAAAGGAGTGTTTTATCCTCATGGGTCTTCCAAGGAAAGTGAGGGTTTAATGGCCGGGTCAAATGAGTCTGAGTTGGTAATTAAAAGTCGGATACATCATTCTCCTGAAAGTACACATTGA 2787 44.17 MPRSSRHKSSKHSSKDVKDYPVSEKDSTSKDKRSREEVGLRVLKDSSRKLDSKDAKDIYVAGNGERLEEHGSSKRRTEKGDDGTTDRWNGGDDHDQGEAFNSKVSSDLKNKRKDENVGFVGDGEGGKKAAGKEGRHRESSRKEAREDGAEREKKGREGRNERTVDSEDYRPTKQVENTDRDRDRNRDRDWDRNRDRGRDLERDRGHDHVDYDGSTVEDRSSKYRSREKKRSSDGCDDYSDVKSISVRVRGTDVDVEKKSSSIDRVDYDAKRGGSQVHSTHTDAFISNNRRRNSPGSISFVNADEYSHPESEDMKYRDSLQEQASKANYSRELPGSSGPLERGSKYRSIEKLTKTDGGYFGEPFNERSSSSKALDIEETGRRSASIDMREFSNVEDRVNRDLTMEKPLVDESSQAESSFYRVGLGGTSSLGPPAFRSGVDSPSFANSVEDNFKANSAGRYRRNGDPNSGRMHGNAWRGVANWTAPMPNGFIPFQHGLPHGGFQPMVPQFPARPLFVRPLEINHSGMPYHISDVERFSSPFRPLGWPNVLDGSGPSNLHGWDGSNGVFRDEPLVYRRAEWDQNGRGWESGAVWKGQNGDLITDLASPSDKDDHGVQAHGDTGPVNDVSHPEDSSHGVLLKKPADFTSNAATPVKESSSPLPEPASEKALSRIYLSKIEISADLTSPELYNQCMNLLETEQCLIADDDFSSVKLFKMGARAGLGSSKIIRPPIKDYVFKKAMDLYKKQMMKERDVVFVTKEVADINSPTNDKIVGEQSPIAVVEKSENPVAVADVEMTEIINSKLETREEADQITDLNEVIQELEDNENPDEKLNPSSQKIDDMAFQQDVKTEGGGNESPSLAGNMQVETPSSLLVENGIDAAEKQPDGDSMKGVFYPHGSSKESEGLMAGSNESELVIKSRIHHSPESTH 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36802986 36808767 + Bda028910.1 Bda07g01930 10820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01930 928 MobiDBLite consensus disorder prediction 1 382 - -
Bda07g01930 928 PANTHER OS05G0595500 PROTEIN 181 928 - -
Bda07g01930 928 MobiDBLite consensus disorder prediction 276 300 - -
Bda07g01930 928 Coils Coil 804 824 - -
Bda07g01930 928 MobiDBLite consensus disorder prediction 305 319 - -
Bda07g01930 928 MobiDBLite consensus disorder prediction 12 275 - -
Bda07g01930 928 PANTHER LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN 181 928 - -
Bda07g01930 928 MobiDBLite consensus disorder prediction 876 928 - -
Bda07g01930 928 PANTHER LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN 1 181 - -
Bda07g01930 928 MobiDBLite consensus disorder prediction 597 636 - -
Bda07g01930 928 PANTHER OS05G0595500 PROTEIN 1 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01930 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 - zju:107414603 605.905
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g01930 Bda09g00013 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00119 Bda-Chr5:5917942 Bda07g01930 Bda-Chr7:36802986 8.90E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g138 . . . . . . Bma07g01686 . . . . . . . . . Cpe05g00604 . . . . . . . . . . . . . . Cone8ag0242 Cone12ag0246 . Cone9ag0855 . . . . . Blo19g00369 Bda07g01930 Bda09g00013 Bpe08g01521 . . . . Cmo02g01141 Cmo15g01093 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004460 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 42