Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01942 ATGATGGATGGCATCAGTGACGAGGAAGAATCCCAGTTTTTCGATGCCTCAGAGGATGTTACTTCAATATCTGATGGAAGTTGTGATGGCAGAGGGATTCTTCGTTATAATTCTAGTTTTAAGGACCGTTTTCAGTGTGGTTTCCTGTATGATGTTTGGAGCAGGAGCCCCCAGAGCGTTGAAGAGCGCCGTGGAAGGTTTTTGCAATGGATGAGATTGAATTTGGACCAAATTGCTTTTGATCATTCAGAGGATTTATGTGGTGATATGATGGGGGAACAAAAGGAAAGAGATGGGGATGTGGAGAGCAATAGGGCTGAAGATGAGTTCTATTCGACTGATAATTTTGATTCTGCAGAGCAGAAAGGTTCGGTTGAAAATGTTGTTTGCACAGATGAGAGAATCGTCTCTAACGTGGATAAGATGAAGCCGAACAAGAGGAGCGTTGAGTTTAAAGAAGTTCAATTAGGGATGGGTGAAGAGTGTGATACAAGTTCTAGTTCATTCTCCTCCATCCATATGATGAAGACCCGTGTTCAGAAGAGAAACAGTCTAGGGGATTACACGAAGATACATAAGAAGAATTGGCTGCAAAAGTTGCGTTCTTTATCATGCGTTGTTGGTGTGAACGGTGAAGATTGTCCATCGAGATCGGATAAAGATGAACTCCTGAGGCCCAAATTTCAAAGAATTAAGGTCCATCAGTTCAAGAAGCAGTCGAAGGAGCTTTCTGCTCTTTATATGGGGCAAGATATCCATGCTCATGATGGTGCAATTTTGGCTATGAAATTCAGCCCTGATGGGCAATATCTTGCAAGTGGTGGAGAGGATGGAATTGTTAGATTGTGGCAAGTAGTGGAGGACGAGAGATCTAATGATACAGATATTCCAGAAATCGAGCCATCAAGCATATACTTCATAGTGAACCATCTATCTGAATTGAAACCTCTATTTGAGGATAAAGAGAACACAAGTTATAGATCAATAAGCCTGAAGAAGACATCCGAATCGGCTTGTGTCATTTTCCCTCCTAAGGTCTTCCGTATAGTGGAAAAGCCCTTGCGAGATTATTGTGGACATAAGGATGAGATCTCCGATCTATCGTGGTCTAAGAACAATTATCTTCTTTCCTCATCAGTTGACAAAACCATTCGTTTATGGCACGTAGGACATGACAATTGCATAAAAGTTTTTTCCCACAGTGACTACGTAACATGCGTTCAATTTAATCCCGTGGATGATAATCACTTCATTAGCGGGTCAGTAGATGGAAAAGTTCGCATTTGGAGAATATCCTCCTGTCAAGTTGTTGATTGGACTGATATTAGAGAAATAGTTACTGCAGTGTCTTATCGGCCGGATGGAGAGGGAGGAATTGTTGGATCAATGACCGGCGATTGTCGATTTTACAACATATCAGGTTCTAACCAAATGCAGTTAGATGCTCAAATATCCTTCAATAGTAAGAAAAAGTCTGCTGGCAGGAAGATAACAGGCTTTCAGGTATTCTTTCTCGACTCAATGCCTAAAAATCCCATTTTCTCGATAAGATGTGAAGTTTTATTTGTTGATTGTTGCCAGTTCTTTCCTCAAGATTCTAGCAAAGTAGTGGTGACTTGTGCTGATTCTTATGTCAGAATTCTTCATGGATCTGATGTGGTCGGAAAATACAAGGGATTTCACAATGCTGGAAACCAGGTTCCGGCCTCTTTCACGTCTGATGGAAAGTATATTGTGTCGGCTTGTGGGGATTCTAATGTATATCTGTGGAACTCCGGTGGCCTCTCTCACGCCAGAAAAAATAAATCTTATGAGCATTTCTCAACCAATGCCTCTGTTGCGGTGCCTTGGAGTGGTTTCGGTTATAGTAACACAGAGAACGGTTGCCAAGATTATGCACTAGAGAAGATTGCATCTGAAAATCTGTCTCTCTCTTCCTCGCCTGCTAGTTTCATGTTGAGTAAAGAGTATTTCTTGGAGACTTTTCCGAAAGGATCGACACTTTGGCCGGAAGAGAAACTACCCGAATCTGGCCTGCATTTCAAGCAGTTGAGAATGCATAAATCTGAGTACAAGTTTCTCAAGTCTTCCTGCCAGAAGACATCAAATTCCCATGCTTGGGGCATGGTTATTGTTACCGCAGGCTGGGATGGACGGATCAAGTCGTTTCATAATTACGGATTACCGGTACCCGTTTGA 2199 42.02 MMDGISDEEESQFFDASEDVTSISDGSCDGRGILRYNSSFKDRFQCGFLYDVWSRSPQSVEERRGRFLQWMRLNLDQIAFDHSEDLCGDMMGEQKERDGDVESNRAEDEFYSTDNFDSAEQKGSVENVVCTDERIVSNVDKMKPNKRSVEFKEVQLGMGEECDTSSSSFSSIHMMKTRVQKRNSLGDYTKIHKKNWLQKLRSLSCVVGVNGEDCPSRSDKDELLRPKFQRIKVHQFKKQSKELSALYMGQDIHAHDGAILAMKFSPDGQYLASGGEDGIVRLWQVVEDERSNDTDIPEIEPSSIYFIVNHLSELKPLFEDKENTSYRSISLKKTSESACVIFPPKVFRIVEKPLRDYCGHKDEISDLSWSKNNYLLSSSVDKTIRLWHVGHDNCIKVFSHSDYVTCVQFNPVDDNHFISGSVDGKVRIWRISSCQVVDWTDIREIVTAVSYRPDGEGGIVGSMTGDCRFYNISGSNQMQLDAQISFNSKKKSAGRKITGFQVFFLDSMPKNPIFSIRCEVLFVDCCQFFPQDSSKVVVTCADSYVRILHGSDVVGKYKGFHNAGNQVPASFTSDGKYIVSACGDSNVYLWNSGGLSHARKNKSYEHFSTNASVAVPWSGFGYSNTENGCQDYALEKIASENLSLSSSPASFMLSKEYFLETFPKGSTLWPEEKLPESGLHFKQLRMHKSEYKFLKSSCQKTSNSHAWGMVIVTAGWDGRIKSFHNYGLPVPV 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36880142 36883058 - Bda028921.3 Bda07g01942 10832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01942 732 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
Bda07g01942 732 Pfam WD domain, G-beta repeat 253 283 IPR001680 GO:0005515
Bda07g01942 732 Pfam WD domain, G-beta repeat 352 387 IPR001680 GO:0005515
Bda07g01942 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 285 - -
Bda07g01942 732 MobiDBLite consensus disorder prediction 1 15 - -
Bda07g01942 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 433 IPR001680 GO:0005515
Bda07g01942 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 293 IPR001680 GO:0005515
Bda07g01942 732 SUPERFAMILY WD40 repeat-like 251 722 IPR036322 GO:0005515
Bda07g01942 732 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Bda07g01942 732 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Bda07g01942 732 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Bda07g01942 732 Gene3D - 235 503 IPR015943 GO:0005515
Bda07g01942 732 PANTHER WD REPEAT DOMAIN 44 4 506 IPR040324 -
Bda07g01942 732 PANTHER WD REPEAT DOMAIN 44 525 732 IPR040324 -
Bda07g01942 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 433 - -
Bda07g01942 732 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 525 732 - -
Bda07g01942 732 MobiDBLite consensus disorder prediction 1 22 - -
Bda07g01942 732 SMART WD40_4 550 591 IPR001680 GO:0005515
Bda07g01942 732 SMART WD40_4 350 388 IPR001680 GO:0005515
Bda07g01942 732 SMART WD40_4 509 549 IPR001680 GO:0005515
Bda07g01942 732 SMART WD40_4 245 284 IPR001680 GO:0005515
Bda07g01942 732 SMART WD40_4 432 471 IPR001680 GO:0005515
Bda07g01942 732 SMART WD40_4 391 430 IPR001680 GO:0005515
Bda07g01942 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 389 - -
Bda07g01942 732 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 4 506 - -
Bda07g01942 732 Gene3D - 504 619 IPR015943 GO:0005515
Bda07g01942 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 397 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01942 - - - qsu:112008846 778.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00793 Bda07g01942 CCT
Bda07g01942 Bda15g00789 CCT
Bda06g00793 Bda07g01942 ECH
Bda07g01942 Bda15g00789 ECH
Bda05g00130 Bda07g01942 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00793 Bda-Chr6:10998273 Bda07g01942 Bda-Chr7:36880142 0 dispersed
Bda07g00286 Bda-Chr7:4007315 Bda07g01942 Bda-Chr7:36880142 6.86E-110 dispersed
Bda07g01942 Bda-Chr7:36880142 Bda15g00789 Bda-Chr15:11794083 0 dispersed
Bda05g00130 Bda-Chr5:6011416 Bda07g01942 Bda-Chr7:36880142 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52