Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01956 ATGGCCACCGCAGCAGCAGCTCAGGCGGCCGTGGCAACGGCCCAAGCAGCCGTGGAGGTGTTTAGACTTTCCAGGTCTTCCCTTCTCGTCAGAGAGCACTCGGCTGCGCTTCTCATTCAAAAAGCCTTCAGAGGCTATCTGGCGAGAAGAGCCCTCCAGGCGCTGAAAGGAATTGTGAAGTTGCAAGCTTTAGTGAGAGGATACAACGTTCGAAGGAGAGCCAAAATGACTCTCCAATGCATGGAAGCTCTGGTACGAGTTCAAGCCAGAGTCCTCCAGCAACGTACAAACAGGATCTCACGTGAAGATTCTGCATGTTTTAGCGATCACAGCAGCCAGAGGGGATCCCGTTTCGCAGAAATCAGAAAGTCCTCCGCGACCGTAAGATCATTTTTTGCCTGCATTTTTTCTCAAATGCAGTCTAGAGAAGAAAGCAGCGCCCCTGAAGAGTCGCTCGAGCTGATGGGTATACAACTCATGGCCGGACAAAACTCTCTTTCGGACGCCTTCTCGCAACAGATATGGAAGAGTGGAGGAAAGGGAAGAGAGAGGGAGGATAAATCAAGATCGGCGTGGGAGAGCAAGGGCAGAAGATATTCATGCGATCAAAGAGACCCCATTAAAATTGTTGAAATGGATACTTCGTCTCACCTTTACTCTCCCTCACCCCGCCATAACCAGAAATCACAGAAGCAACACCATCAATCTCCACTAAACAGAGCCCACACTCTGTTGTCGCTTCAATCCAACACCTCATCGCCATCCAAAACCAAAAATCTGCAAATCCACTCGGCAAGCCCGCGCTGCATGAGAGAAGATAGAAGCCATCCAAATCCAAACTACATGTCCACAACGGCATCATCTGATGCTAGGTTTCGATCCATGAGTGCACCCAGGCAGAGGCCTTGTACACCAGAGAGGGAGAAGAGCTGCTCTGCCCAAAAACGCTTGTCCTTCCCAGTTCCAGAGCCCATTCCTGCTGATAGATTTGAAATGAAGCCAACGTCGACGTCTTCTTGCTGCACAGACAGCCTTGTCGACGATGATGTCTCGCTGTCTTCACAGAGTGATCTCAGGGCGTGGTTTAGGCATTTGTAA 1098 50.46 MATAAAAQAAVATAQAAVEVFRLSRSSLLVREHSAALLIQKAFRGYLARRALQALKGIVKLQALVRGYNVRRRAKMTLQCMEALVRVQARVLQQRTNRISREDSACFSDHSSQRGSRFAEIRKSSATVRSFFACIFSQMQSREESSAPEESLELMGIQLMAGQNSLSDAFSQQIWKSGGKGREREDKSRSAWESKGRRYSCDQRDPIKIVEMDTSSHLYSPSPRHNQKSQKQHHQSPLNRAHTLLSLQSNTSSPSKTKNLQIHSASPRCMREDRSHPNPNYMSTTASSDARFRSMSAPRQRPCTPEREKSCSAQKRLSFPVPEPIPADRFEMKPTSTSSCCTDSLVDDDVSLSSQSDLRAWFRHL 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36949833 36951102 - Bda028935.1 Bda07g01956 10846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01956 365 MobiDBLite consensus disorder prediction 215 237 - -
Bda07g01956 365 Pfam Protein of unknown function (DUF4005) 223 325 IPR025064 -
Bda07g01956 365 MobiDBLite consensus disorder prediction 249 314 - -
Bda07g01956 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 76 IPR027417 -
Bda07g01956 365 SMART iq_5 54 75 IPR000048 GO:0005515
Bda07g01956 365 SMART iq_5 31 53 IPR000048 GO:0005515
Bda07g01956 365 Gene3D - 30 83 - -
Bda07g01956 365 MobiDBLite consensus disorder prediction 319 338 - -
Bda07g01956 365 ProSiteProfiles IQ motif profile. 56 83 IPR000048 GO:0005515
Bda07g01956 365 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 1 327 - -
Bda07g01956 365 MobiDBLite consensus disorder prediction 178 211 - -
Bda07g01956 365 Pfam IQ calmodulin-binding motif 33 52 IPR000048 GO:0005515
Bda07g01956 365 Pfam IQ calmodulin-binding motif 56 75 IPR000048 GO:0005515
Bda07g01956 365 MobiDBLite consensus disorder prediction 277 294 - -
Bda07g01956 365 MobiDBLite consensus disorder prediction 249 264 - -
Bda07g01956 365 MobiDBLite consensus disorder prediction 174 237 - -
Bda07g01956 365 ProSiteProfiles IQ motif profile. 32 60 IPR000048 GO:0005515
Bda07g01956 365 PANTHER IQ-DOMAIN 5-RELATED 1 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01956 - - - rcu:8282967 273.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01956 Bda-Chr7:36949833 Bda06g00672 Bda-Chr6:9368649 5.12E-18 dispersed
Bda07g01956 Bda-Chr7:36949833 Bda11g00594 Bda-Chr11:6054835 9.03E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g250 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01956 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g977 . . . Bda07g01956 Bpe03g00205 . . Bma14g02027 . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0723 . . . . . . . Blo09g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54