Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda07g01959 ATGAAAGATGGGAGTTCGAGTAGGGTCGTGGTCAGGTGGGAGAGGTTTTTGCAGCGGATGATGCTCAGGGTCTTGCTCATCGAAGCTGATGATTCCACTCGCCAACTTATCGTTGCCCTTCTACGGAAATGTGGCTACAAAGCAGTCGCAGCTACCCCTGATGGCTTAAAGGCTTGGGAGTTACTCAGGGGAAGACCCAACAGTATTGACCTCATATTAACAGAAGTAGACTTGCCATCGATATCTGGATTCGCCCTGCTTACACTAATTATGGGCCATGACATTTGCAAAAATATTCCTGTTATAATGATGTCCTCACAGGATTCTATTAGCACTGTCTATAAATGCATGATGAGAGGTGCTGCTGACTATCTCGTTAAACCTATTCGGAGAAATGAGTTGAAAAATCTCTGGCAACACGTTTGGAGAAGACAATCTTCAACTGCGGGAAGAAATGGCTCCCAAGAGCATGTTGCACGAAAAAAATTTGAAGTTATGTCTGAAAATGAGGCGGCAAGCAATCATTTAAATGGCTGTGTGGCTGATGTTCACACTTATAAGGCATACATTGAAAAAGGGAGTGATGCTCAGAGCTCTTGTACAAAGCCAGAAGTTGAAGCTGAGAGTACCCGTGTGGGAAAGATGCAGGAGTATCCACAGGCATACGTTGGCAGATCATTTCTTGGTCACTTTAACTTACAAAGGGATGAAACTAATGTCAACTTGTGCCCGAAATTGCTTATGCATGAAAATGAAACTGGAGGGTCCAATTTGGGCACAAACGGGAAAACCAGCGCTGAAATTGCCAAAACTACAAGCGATGGGGCTAGAAGTCATAACATTGATCCTGATAACGCTGGTGATGCTAACACCAACATCAACAATTTCACCGTTGTTAGTTCTTCCAGAAACACCACTGACTTGATTGGAGCATTTGCAGACTATCCAGATTGCAATGACAGGAATTCCTCTTCAAGTAATGGTACTAGCAGTTTTGATAATGCTTCGCAGTTAGATCTTTCCTTGAGAAGATGTCATCCTAATGATTTTGAGGACAATCTTATGACAGAAAGGCATACCCTCAAACATTCTAATGCCTCGGCCTTTTCTCGATACACTAACAGGCCCATTCAACATCTTCAACAGAAATTTATCGATGTTTTTGATGAGCAAAAAGAAAATGAGACCAATCCTGAGAAACGTGTCTTTGGCATGGCTACAGGTTATGCCGCTCATAACCCTGATCCTAGATTAAGCGTGCAACAAAGCGATGTCTCTTCGTCTTCTGCTCAGTCCAATCAAATGAAGACATGCCCCACACCCATGCAGGTGAAAGGTGTAAGATTTAATGATCCTTGCTCGGGCTATGGATCTGCACTTTCTCCAATATTTTGTGGACAATCAGGACTTTCACCTTATCCTACCCCAAGTACAGCAGCAAATCTCAAATCCTCCTTTCCGAAGAATTCGTTGTACGATTCTACTCTCCAAAACAATAACTCCGAAAAATTGTCAGAGCCCCTTCATGACAATTGCAACAACCTTGCAAACCAACCAAGGGAAAAGCAGGGGCAGCAATTTCATTCTTCTGCAGATGATGGACGGATTTCTCTCACTACAGACCTCGGTGTGAATAGTAGTGGCTTGAAATCTGTAAACACCTTTCGAAGCAACTTTAATTTAAATCAGGCCCCCTTAGCCATGAGTACAGGAGAATGCAAGAACAAAGAAGAGGACCTTTATAGTACGAAAGATCTTCATCAATCGACTCAAAGAGAAGCAGCATTAAGTAAGTTCCGGTTGAAACGTAAAGATAGATGTTACGTGAAAAAGGTTCGATATGAGAGCAGGAAAAAACTAGCAGAGCAACGCCCTAGAGTGAAAGGACAATTTGTTCGTAGGTTGCATATTGATCCACCACCTCCAGACACCAAAGGAAATTTGGGTACATAA 1953 42.81 MKDGSSSRVVVRWERFLQRMMLRVLLIEADDSTRQLIVALLRKCGYKAVAATPDGLKAWELLRGRPNSIDLILTEVDLPSISGFALLTLIMGHDICKNIPVIMMSSQDSISTVYKCMMRGAADYLVKPIRRNELKNLWQHVWRRQSSTAGRNGSQEHVARKKFEVMSENEAASNHLNGCVADVHTYKAYIEKGSDAQSSCTKPEVEAESTRVGKMQEYPQAYVGRSFLGHFNLQRDETNVNLCPKLLMHENETGGSNLGTNGKTSAEIAKTTSDGARSHNIDPDNAGDANTNINNFTVVSSSRNTTDLIGAFADYPDCNDRNSSSSNGTSSFDNASQLDLSLRRCHPNDFEDNLMTERHTLKHSNASAFSRYTNRPIQHLQQKFIDVFDEQKENETNPEKRVFGMATGYAAHNPDPRLSVQQSDVSSSSAQSNQMKTCPTPMQVKGVRFNDPCSGYGSALSPIFCGQSGLSPYPTPSTAANLKSSFPKNSLYDSTLQNNNSEKLSEPLHDNCNNLANQPREKQGQQFHSSADDGRISLTTDLGVNSSGLKSVNTFRSNFNLNQAPLAMSTGECKNKEEDLYSTKDLHQSTQREAALSKFRLKRKDRCYVKKVRYESRKKLAEQRPRVKGQFVRRLHIDPPPPDTKGNLGT 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36961945 36965549 + Bda028938.2 Bda07g01959 10849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda07g01959 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 14 626 - -
Bda07g01959 650 ProSiteProfiles CCT domain profile. 592 634 IPR010402 GO:0005515
Bda07g01959 650 SUPERFAMILY CheY-like 21 153 IPR011006 -
Bda07g01959 650 Gene3D - 20 202 - -
Bda07g01959 650 ProSiteProfiles Response regulatory domain profile. 23 142 IPR001789 GO:0000160
Bda07g01959 650 Pfam CCT motif 592 633 IPR010402 GO:0005515
Bda07g01959 650 SMART REC_2 22 138 IPR001789 GO:0000160
Bda07g01959 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 626 IPR045279 GO:0009736
Bda07g01959 650 Pfam Response regulator receiver domain 24 136 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda07g01959 K12130 PRR5; pseudo-response regulator 5 - zju:107414998 613.609
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00143 Bda07g01959 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00757 Bda-Chr3:6371996 Bda07g01959 Bda-Chr7:36961945 1.44E-50 dispersed
Bda07g01959 Bda-Chr7:36961945 Bda14g00095 Bda-Chr14:684443 4.65E-52 dispersed
Bda07g01959 Bda-Chr7:36961945 Bda08g00081 Bda-Chr8:750110 7.59E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g961 . . Bda05g00143 Bda07g01959 Bpe03g00223 . Bma10g01321 Bma14g02030 . . . Cma15g00995 Car02g00951 . . Cpe05g00576 . . . . . . . . Cla01g00007 Cam01g0007 Cec01g0006 Cco01g0008 Clacu01g0008 Cmu01g0008 Cre09g2497 Cone1ag1021 Cone5ag0728 . . . Csa05g00009 Chy09g01471 . Blo07g00314 . . . . . . . . Cmo02g01182 Cmo15g01055 . . . . . Cpe13g00339 Bhi12g00702 . . . Hepe06g0835 . . . . . . . . . . . . Cme09g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16213 PF00072 Response_reg 2.40E-21 CL0304 Bda TR