Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00011 ATGGCCGCCGAGCAAAAGTCTGCATTTTCTTCACCTATGAAGAAGTGTAAGAGGAAGAGGAAACAAACCCAGATGGATCCCGAACTGAAACGCCTTGATTCGCTCGCCTGGAAATCCTCTTTCCCTGCCAACGATCCCTTTTCGATGTTCATTGGTTCTAACGAACTAGAAGGAGGGTTTCTTTCATTAGAAGAGATTGACGAGGCCCAATATGGCTCGAAAATTCCTGAAATTGTAACTGGTGGCAGCAAGTTCGAAAAAACTACTATGATAACGAAGAAACAGGACAATGGCAATGAATGCGAGGGCAGTGATAAGAGTCAAGGTGAAGTGGAAGAGAGAGTGGAGCGAGAAGAGAATGTTGAGACTACAAAAAAGAGGAAGAAGAATAATAATTTAAGCAAAATCCCAGAAGAGGAGAAACTAGCCGGTAGAGATGTTGATGGCTGTAGTAGCAATGAAACTGAGTTAAAGTTTGAAGAAAAAATGGCGGACGGAAATAATGCCGAGAAAAGAAAGAAGAAAAAGAAAAAGAAGATGAATAAGGGGACAGAGAAAACTTATGAGAACTATCTTTCCACGATTAACAAAGTCAAGAATGAATTTGAAGAGAAGCCAGTGGATGAAACTGAATTTTATGCATGGAACGAGTTGAGACTTCATCCTCTGCTTATGAACTCAATCTACAAACTTGGATTCAAGGAACCCACCCCGATACAGAAAGTTTGCATTCCTGCTGCTGCTCACCAGGGGAAGGATGTTGTTGGTGCGGCAGAGACTGGATCTGGAAAGACACTTGCTTTTGGGCTGCCCATTTTGCAACGGCTCTTGGAGGAACAGGAAAAGGCTGGCAGAACTAAGGAAGGAAAGGAGGAAGAAGAAGATGATAATGCTTTGAGATGCTTACGTGCTCTTATAATTACTCCAACAAGGGAACTAGCTCTTCAGGTCACTGATCATCTCAAGGCAGTTGCAGAGGGCGCAAATGCTAGAGTAGTTCCTATTGTTGGTGGGATGTCAACAGAAAAACAGGAAAGACTTCTAAGATCAAGACCTGCGATTATTGTTGGCACTCCAGGGAGGCTCTGGGAACTTATGTCTGGAGGAGAAAAGCATCTTTTGCACATGCTATCCTTTTTTGTACTAGACGAGGCCGATCGTATGATCGAAAATGGGCATTTTCATCAGTTGCAATCCATAATTGACATGCTTCCCAGTACTAATGGCTCTGTTGAAGGCAAATCTCAAAGTTTAGATAATGGCGTGACAACCATACAAAGAAAGAAAAGACAAACATTTGTTTTTTCTGCTACCTTATCCCTTTCTTCTGATTTTCGTAAGAAGCTAAAACGTGGATTGGAAAGATCAAAGCAATCAGGCTCTGGTGATTTGAATTCTATTGAAGCCCTTTCTGAGCGAGCTGGAATGAGAGATAATGCCGCTATCATTGACCTGACGAATGCTTCAATTTTAGTGCATAAGCTTGAAGAATCGTTTATAGAATGCAGGGAAGAAGATAAAGATGCCTATTTGTATTACATTCTGAGCGTTCATGGGCAAGGCCGCACAATAGTTTTTTGTACATCGATTGCTGCTTTGCGACGGGTTGCTGCCCTCTTGAGCATCCTCGGTGTAAATGCTTACACTCTTCATGCTCAGAAGCAGCAAAGATCTCGTTTAAAAGCAATGGATCGTTTTCGTTCCAGTGAAAATGGTACACTTATTGCTACAGATGTTGCAGCAAGAGGCCTTGATATTCCCGGTGTTCGTACTGTTATTCACTACCAACTTCCACATTCGGCCGAAGTTTATGTTCATAGAAGTGGGAGAACTGCTAGAGCTTCAGCTGATGGGTGCAGCATTACACTAATCTCCCCAAATGAAACTTCCAAATTTGCTTCATTGTGCAAATCATTCTCTAAGGAAAGCTTTCGGCAATTCCCTCTTGATCATTCATACATTCCGGGGATTATGAATCGTTTATCACTTGCCCGCCAGATTGACAAGATCTTGAGAAAGGGCTCTCAGGAGAAGGCAAGGAAAAGCTGGTTGGAAAAAAATGTGGAATCAGTGGAATTTGATGGTGACAAAGATGACAGTGAGGAAGAAACAGTGAACAATCACAAGCAAAGGAAGGCAGTCTCCATGCAATTAAAGAACTTACAGCAGGAACTGAATAATCTCCTTTCGCGTCCTCTTCAACCAGAATCTTTTTCTCATCGTTATTTGGCCGGGGCTGGCGTTTCTCCATTACTACAAGCCCAATTTGAAGAACTGGCTCGGCAAAAATTTGGTGGCGGGAACGCGGGCGACAAGAAAAGAAAGAAACTAATGGTTATTGGTCAGGATTGTGTCGAACCAATCGAAGCGCTCAAAAGCTCCCGTTTTCAGGTAAATCTATCACTTTCTATGTTTTCTGGTGGTTATGGACATCCCCATGAATGGGCTTCATTTAGCCCCGAGTTTCTGCTTTTGACTCATTTTGGATTTCCATAA 2496 42.55 MAAEQKSAFSSPMKKCKRKRKQTQMDPELKRLDSLAWKSSFPANDPFSMFIGSNELEGGFLSLEEIDEAQYGSKIPEIVTGGSKFEKTTMITKKQDNGNECEGSDKSQGEVEERVEREENVETTKKRKKNNNLSKIPEEEKLAGRDVDGCSSNETELKFEEKMADGNNAEKRKKKKKKKMNKGTEKTYENYLSTINKVKNEFEEKPVDETEFYAWNELRLHPLLMNSIYKLGFKEPTPIQKVCIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEQEKAGRTKEGKEEEEDDNALRCLRALIITPTRELALQVTDHLKAVAEGANARVVPIVGGMSTEKQERLLRSRPAIIVGTPGRLWELMSGGEKHLLHMLSFFVLDEADRMIENGHFHQLQSIIDMLPSTNGSVEGKSQSLDNGVTTIQRKKRQTFVFSATLSLSSDFRKKLKRGLERSKQSGSGDLNSIEALSERAGMRDNAAIIDLTNASILVHKLEESFIECREEDKDAYLYYILSVHGQGRTIVFCTSIAALRRVAALLSILGVNAYTLHAQKQQRSRLKAMDRFRSSENGTLIATDVAARGLDIPGVRTVIHYQLPHSAEVYVHRSGRTARASADGCSITLISPNETSKFASLCKSFSKESFRQFPLDHSYIPGIMNRLSLARQIDKILRKGSQEKARKSWLEKNVESVEFDGDKDDSEEETVNNHKQRKAVSMQLKNLQQELNNLLSRPLQPESFSHRYLAGAGVSPLLQAQFEELARQKFGGGNAGDKKRKKLMVIGQDCVEPIEALKSSRFQVNLSLSMFSGGYGHPHEWASFSPEFLLLTHFGFP 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 117464 123265 + Bda024402.1 Bda08g00011 10867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00011 831 Gene3D - 489 650 IPR027417 -
Bda08g00011 831 MobiDBLite consensus disorder prediction 1 30 - -
Bda08g00011 831 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 110 763 - -
Bda08g00011 831 MobiDBLite consensus disorder prediction 92 184 - -
Bda08g00011 831 CDD SF2_C_DEAD 495 624 - -
Bda08g00011 831 MobiDBLite consensus disorder prediction 92 170 - -
Bda08g00011 831 Pfam DEAD/DEAH box helicase 237 440 IPR011545 GO:0003676|GO:0005524
Bda08g00011 831 Pfam Helicase conserved C-terminal domain 506 614 IPR001650 -
Bda08g00011 831 SMART ultradead3 232 470 IPR014001 -
Bda08g00011 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 631 IPR027417 -
Bda08g00011 831 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Bda08g00011 831 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 245 457 IPR014001 -
Bda08g00011 831 Coils Coil 711 731 - -
Bda08g00011 831 CDD DEADc_DDX24 224 484 - -
Bda08g00011 831 SMART helicmild6 534 615 IPR001650 -
Bda08g00011 831 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 655 IPR001650 -
Bda08g00011 831 Coils Coil 273 293 - -
Bda08g00011 831 Gene3D - 168 458 IPR027417 -
Bda08g00011 831 PANTHER RNA HELICASE 110 763 - -
Bda08g00011 831 Coils Coil 181 201 - -
Bda08g00011 831 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 213 241 IPR014014 GO:0003724
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00011 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - zju:107422736 998.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00011 Bda-Chr8:117464 Bda01g00477 Bda-Chr1:31845981 9.00E-62 dispersed
Bda10g01009 Bda-Chr10:44259707 Bda08g00011 Bda-Chr8:117464 1.50E-26 dispersed
Bda13g00503 Bda-Chr13:5972182 Bda08g00011 Bda-Chr8:117464 1.45E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00011 Bda_Chr08 FPKM 0.0 0.0 0.111462 0.307778 0.575423 0.0 0.412371 0.0 0.339203