Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00015 ATGCAAAACCTCAAAACCATTCCCAATGAAGAAACCGACGTTCGAACGTTCTTTTACCAAGATTTTTTCGCTCGAACGTTCACTTGGGTAAATGGCCCTATAATCGTAGGAGCTGGTCCTTCCGGTCTAGCCATGGCGGCTTGCCTTAAAAAACAAGGGGTACCCTTCGTCATCCTCGAGAAGACAAACTGCATTGCTTCTCTCTGGCAAAACCGAACTTACGATCGACTTAAACTTCATCTTCCCAAACAATTCTGCCAGTTACCCCATTTTCCGTTCCCGGAAAATTTCCCAGAATATCCGACCAAACACCAGTTCATCAGCTACTTAGAATCATACGCTGAACATTTTGATATTAAACCACGATTCAATGAGGCAGTGAAGTCCGCAAGATACGACGAAACTTTCGGCATGTGGCGGGTTAAAGTCGTTTCAGGAGGTTGTTCTGAGGTCGAATACGTCGGCCGGTGGCTAGTGGTGGCGACCGGAGAGAATGCAGAGAGAGTGGTTCCTGATTTTGAAGGTTTGGATGAGTTTGGAGGGAGTGTGATTCATGCTTGTGATTATAAAAGTGGTGAGATTTACGGAGGGAAACGTGTTCTTGTTGTTGGGTGTGGAAATTCGGGCATGGAAATTTCGCTTGATCTCTGCAACCACCGTGCTGCTCCATTAATGGTGGTTAGAAACTCGGTGCATGTGTTGCCGAGAGAAGTTCTTGGAAAATCTACCTTCGAGATTGCAGTTTTACTGATGAAATGGCTGCCTGTTTGGTTAGTGGACGAGATTCTGCTAACCCTAGCTAGAATAAGTCTCGGAGATGTAGAAAAAAATGGTCTTAAAAGGCCATTAATGGGTCCACTACAGCTCAAAAACAGTGCTGGAAAGACTCCTGTTCTTGATATCGGCACTTTAAAGAAGATAAGAAAAGGTCAAATAAAGGTGGTTTGTGGGATCAAGAGGTTTTCATGTGGAAGAGTTGAGCTTGTTAATGGCGAAGAATTTCAGATTGATTTCGTCATTCTCGCAACTGGGTATCGCAGCAACGTTCCCTCATGGTTACAGGAAAATGAACTATTTTCCAGCGATGGGATTCTAAGAACTCCATTCCCAAATGGATGGAAAGGCAAAAATGGAGTCTACGCAGTCGGGTTCTCAAGAAGAGGTCTGTCAGGCGCAGCCTCAGACGCCATTAACGTAGCTCGAGATATTGCCAAGAACTGGAAGGAAGAAACAAAGCAGAAGAACAAATCAACGCAGGGCCGCCATAGGAGGTGCATTTCACAAATCTGA 1290 44.96 MQNLKTIPNEETDVRTFFYQDFFARTFTWVNGPIIVGAGPSGLAMAACLKKQGVPFVILEKTNCIASLWQNRTYDRLKLHLPKQFCQLPHFPFPENFPEYPTKHQFISYLESYAEHFDIKPRFNEAVKSARYDETFGMWRVKVVSGGCSEVEYVGRWLVVATGENAERVVPDFEGLDEFGGSVIHACDYKSGEIYGGKRVLVVGCGNSGMEISLDLCNHRAAPLMVVRNSVHVLPREVLGKSTFEIAVLLMKWLPVWLVDEILLTLARISLGDVEKNGLKRPLMGPLQLKNSAGKTPVLDIGTLKKIRKGQIKVVCGIKRFSCGRVELVNGEEFQIDFVILATGYRSNVPSWLQENELFSSDGILRTPFPNGWKGKNGVYAVGFSRRGLSGAASDAINVARDIAKNWKEETKQKNKSTQGRHRRCISQI 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 147248 148924 + Bda024405.1 Bda08g00015 10871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00015 429 Pfam Flavin-binding monooxygenase-like 35 350 IPR020946 GO:0004499|GO:0050660|GO:0050661
Bda08g00015 429 PRINTS Pyridine nucleotide disulphide reductase class-II signature 195 219 - -
Bda08g00015 429 PRINTS Pyridine nucleotide disulphide reductase class-II signature 32 54 - -
Bda08g00015 429 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 17 427 - -
Bda08g00015 429 SUPERFAMILY FAD/NAD(P)-binding domain 34 230 IPR036188 -
Bda08g00015 429 Gene3D - 33 413 IPR036188 -
Bda08g00015 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 199 217 - -
Bda08g00015 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 33 52 - -
Bda08g00015 429 MobiDBLite consensus disorder prediction 410 429 - -
Bda08g00015 429 SUPERFAMILY FAD/NAD(P)-binding domain 197 408 IPR036188 -
Bda08g00015 429 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 17 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00015 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - rcu:8265684 654.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00026 Bda-Chr3:447265 Bda08g00015 Bda-Chr8:147248 2.83E-123 dispersed
Bda08g00015 Bda-Chr8:147248 Bda12g00692 Bda-Chr12:33530741 0 dispersed
Bda11g00965 Bda-Chr11:9419597 Bda08g00015 Bda-Chr8:147248 1.22E-19 dispersed
Bda08g00015 Bda-Chr8:147248 Bda05g00878 Bda-Chr5:57253894 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00015 Bda_Chr08 FPKM 20.347696 23.532272 12.206148 10.655705 13.029444 12.856081 12.770615 16.847658 15.494696