Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00017 CTACTTCGAGATCCACTGGAGGTGTTTGGTTCTGATATAATGTTGATGATTCTTCGTAATCTTCACGCACGCAGCGTGGCACTCTCTCTCCTCGTTTCTCAGTGTGAGGAGCTGTGGCTTAGAAAAGCTCACATACCGCGCCTATCGCGTAGCAACCGGTTGTCGAAGTTGGCTGCTTATTCGTTTGCAATAAAGGACGGCAAACGTACATGCATCACGAAGGAGGATCTATGCGACCATGTTTGGGAGTTTCATTTCAATTCGGTTGCTCCGGATTACTGGAGAAATCTTGATCCATATTGGAACGGAACGATCCCTTTGATGCACCGATACTTCCACAAAGACGGGAGTCAATCTGCAGATCCCGACGATAAAGTATGGGGAGGGCATGAATGCTGTTATTCCATCGTTACCAGTCGTCGAGTAAGCGACCGGATTATCATGAAACACGGGCGTAATGTGGTGATTGAACAAAGCTATGGCGCTCCAAAGGTGACAAAAGATGGTGTAACTGTTGCCAAGAGTATTGAGTTCAAAGACAAAGTCAAGAATATCGGCGCTAGCCTTGTTAAACAGGTTGCCAATGCAACAAATGATGTGGCAGGCGATGGTAAGGTGTTATTTTTGCATCAATTTTCATCATCTGTGAATATAAACCAGGCAGGTGATGTACTGAACTTATGTGTTATTTCAGGGACCACGTGTGCTACAGTCCTTACTCGTGCAATATTTGCCGAAGGGTGCAAGTCAGTTGCTGCAGGGATGAATGCAATGGACTTAAGACGAGGCATCAGCATGGCAGTTGATGCTGTGGTAACAAACTTAAAGAGCAGAGCACGAATGATTAGCACATCCGAAGAGATAGCCCAGGTGGGAACAATATCCGCAAATGGAGAAAGGGAAATTGGTGAGCTGATTGCCAAGGCTATGGAAAAAGTTGGAAAAGAGGGAGTCATTACGATCTCAGTAAGATGGAAGACATTGTATAATGAGTTGGAAGTTGTGGAAGGAATGAAATTAGACAGGGGATACATATCTCCTTATTTCATTACAAACCAAAAAAACCAAAAATGTGAATTGGAAGATCCCATTATTTTAATCCATGAAAAGAAAATATCCAGCATTAATGGAGTCGTAAAAGTTTTAGAATTAGCTCTGAAGAGACAAAGACCCTTGCTCATTGTTGCTGAAGATGTTGAAAGTGATGCGCTGGCCACCCTTATTCTAAATAAACTTCGTGCCGGGATCAAGGTATGTGCTATTAAAGCACCTGGTTTTGGCGAGAACAGGAAGTCCAATCTCCAGGACCTTGCTGTGCTCACAGGGGGTGATCTTATTACTGAAGAGCTTGGCTTAAATCTCGACAAAGTGGACCTAGATATGCTTGGTACTTGCAAGAAGGTCACTATTTCCAAGGATGACACAGTTATTCTTGATGGTGCTGGTGACAAAAAGGCTATTGAGGAAAGATGTGAACAGATAAGGTCTGGAATAGAGTTGAGCACTTCTGACTATGACAAGGAAAAGTTACAAGAGAGATTAGCTAAGCTTTCTGGTGGAGTGGCTGTATTAAAAATTGGAGGTGCCAGTGAAGCAGAAGTTGGTGAGAAGAAGGATAGAGTAACAGATGCGTTGAATGCCACCAAAGCAGCTGTAGAAGAGGGCATTGTTCCTGGTGGTGGTGTTGCTCTTCTTTATGCGTCGAAAGAGTTGGATAAACTCCCAACTGCTAACTTCGATCAGAAAATAGGAGTCCAGATTATTCAAAATGCTCTAAAGACTCCTGTGCACACCATTGCTGCTAATGCTGGGGTTGAGGGAGCTGTTGTAGTTGGTAAGCTGTTAGAGCAAGATAACCCGGACCTTGGCTATGATGCTGCCAAAGGTGAATACGTAGATATGGTCAAGGCTGGAATAATAGATCCATTGAAAGTAATTAGGACTGCCTTAGTTGATGCTGCAAGTGTTTCATCTTTGATGACGACAACCGAAGCAGTCGTTTCAGAACTCCCGAAGGACGACAAAGAGGCTCCATCAATGGGTGGTGGTGGTATGGGAGGAATGGATTATTGA 2073 43.9 LLRDPLEVFGSDIMLMILRNLHARSVALSLLVSQCEELWLRKAHIPRLSRSNRLSKLAAYSFAIKDGKRTCITKEDLCDHVWEFHFNSVAPDYWRNLDPYWNGTIPLMHRYFHKDGSQSADPDDKVWGGHECCYSIVTSRRVSDRIIMKHGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGKVLFLHQFSSSVNINQAGDVLNLCVISGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISVRWKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPIILIHEKKISSINGVVKVLELALKRQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSNLQDLAVLTGGDLITEELGLNLDKVDLDMLGTCKKVTISKDDTVILDGAGDKKAIEERCEQIRSGIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVVSELPKDDKEAPSMGGGGMGGMDY 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 153105 160189 + Bda024407.1 Bda08g00017 10873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00017 690 MobiDBLite consensus disorder prediction 670 690 - -
Bda08g00017 690 SUPERFAMILY GroEL apical domain-like 330 521 IPR027409 -
Bda08g00017 690 CDD GroEL 151 669 IPR001844 GO:0042026|GO:0140662
Bda08g00017 690 SUPERFAMILY GroEL-intermediate domain like 282 350 IPR027410 -
Bda08g00017 690 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 219 688 - -
Bda08g00017 690 Pfam TCP-1/cpn60 chaperonin family 232 669 IPR002423 GO:0005524
Bda08g00017 690 Gene3D - 145 217 IPR027413 -
Bda08g00017 690 Gene3D - 281 555 IPR027410 -
Bda08g00017 690 PRINTS 60kDa chaperonin signature 143 169 IPR001844 GO:0042026|GO:0140662
Bda08g00017 690 PRINTS 60kDa chaperonin signature 543 564 IPR001844 GO:0042026|GO:0140662
Bda08g00017 690 PRINTS 60kDa chaperonin signature 413 436 IPR001844 GO:0042026|GO:0140662
Bda08g00017 690 PRINTS 60kDa chaperonin signature 495 520 IPR001844 GO:0042026|GO:0140662
Bda08g00017 690 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 149 205 - -
Bda08g00017 690 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 219 688 - -
Bda08g00017 690 ProSitePatterns Chaperonins cpn60 signature. 550 561 IPR018370 GO:0005524|GO:0006457
Bda08g00017 690 Gene3D - 234 664 IPR027413 -
Bda08g00017 690 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 149 205 - -
Bda08g00017 690 SUPERFAMILY GroEL equatorial domain-like 150 667 IPR027413 -
Bda08g00017 690 TIGRFAM GroEL: chaperonin GroL 231 672 IPR001844 GO:0042026|GO:0140662
Bda08g00017 690 Gene3D GroEL 336 520 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00017 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101210207 886.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00913 Bda-Chr4:58913262 Bda08g00017 Bda-Chr8:153105 0 dispersed
Bda08g00017 Bda-Chr8:153105 Bda13g00728 Bda-Chr13:8785323 0 dispersed
Bda03g01108 Bda-Chr3:11273466 Bda08g00017 Bda-Chr8:153105 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g827 . . . Bda08g00017 . . . Bma05g01267 . . Cma06g01276 Cma14g01864 Car06g01097 Car14g01668 . Cpe08g00371 Cpe03g01561 . . . . . . . . . . . . . . . Cone15ag0214 . . Lsi05g01795 . . Cme06g00425 . . . . . . . . . . Cmo14g01908 . . . . . . . . . . . . . Cla05g00385 Cam05g0419 Cec05g0424 Cco05g0424 Clacu05g0415 Cmu05g0397 Cre05g0459 . Csa03g01144 Chy06g00408 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00017 Bda_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.493896 1.119228 1.899936