Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00019 ATGGACCCTTCTTTGGCTTTCATGGACGACCTGCTGGACTTCAACTCAGACATAGGCGAGGGAGGAGACGAAGAAGCCCCACATGGCAACCGTAACCCTAACGGGTCGCCCGACCCGATTGAATTGAACGTGCTAAACTCTCGCTCTGTTCCTGCGACAGGCGAAGAAGAGTTGGAATGGATATCGAACAAAGATGCATTTCCGTCCGTTTATACGTTCGTCGGCACATTAACGGACAAATCTGGCGACATTGCAGAGCTCAGCACACCAGTATCTGTGCTCGAAAATACCTCCACTGGTAGCAACAACAGCAACAACAATAACACCTCTTCCACCGTCACATTCATGAGCTGCTCCGACGACTTCAAGGTCCCTAGTAAAGTGCGAAGCAAATTTCTCCAGAGGCGTCGCCAGGAGATTTCGAGCCTGCCGTTATGGATCAAACAATCAGCCGTGAAAAATAATACAGTAGAAACTGAGGAGAAAGCCAATGCAATCGGGAAAAAGTGTCAGCACTGTGGATCCGAAGAAACTCCGCAATGGCGGGCCGGCCCTCTTGGACCAAAAACTCTCTGCAATGCCTGTGGAGTAAGGTTCAAATCCGGTCGTCTCGTCCCCGAGTATCGCCCTGCAAATAGTCCCACTTTCTCTCATGAATTGCACTCTAATTCGCACAGGAAGGTAATGGAGATGAGGAGGAGGAAGGAGAAGGAAAATTCGATGAATTCTGTAGATAAAGGATAG 744 49.33 MDPSLAFMDDLLDFNSDIGEGGDEEAPHGNRNPNGSPDPIELNVLNSRSVPATGEEELEWISNKDAFPSVYTFVGTLTDKSGDIAELSTPVSVLENTSTGSNNSNNNNTSSTVTFMSCSDDFKVPSKVRSKFLQRRRQEISSLPLWIKQSAVKNNTVETEEKANAIGKKCQHCGSEETPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPANSPTFSHELHSNSHRKVMEMRRRKEKENSMNSVDKG 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 179909 181191 + Bda024409.1 Bda08g00019 10875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00019 247 PANTHER GATA TRANSCRIPTION FACTOR 1 8 235 - -
Bda08g00019 247 CDD ZnF_GATA 169 217 IPR000679 GO:0006355|GO:0043565
Bda08g00019 247 MobiDBLite consensus disorder prediction 212 247 - -
Bda08g00019 247 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 228 - -
Bda08g00019 247 Pfam GATA zinc finger 170 203 IPR000679 GO:0006355|GO:0043565
Bda08g00019 247 SMART GATA_3 164 214 IPR000679 GO:0006355|GO:0043565
Bda08g00019 247 Gene3D - 165 244 IPR013088 GO:0006355|GO:0008270
Bda08g00019 247 MobiDBLite consensus disorder prediction 9 41 - -
Bda08g00019 247 ProSitePatterns GATA-type zinc finger domain. 170 195 IPR000679 GO:0006355|GO:0043565
Bda08g00019 247 MobiDBLite consensus disorder prediction 220 247 - -
Bda08g00019 247 ProSiteProfiles GATA-type zinc finger domain profile. 164 200 IPR000679 GO:0006355|GO:0043565
Bda08g00019 247 PANTHER GATA TRANSCRIPTION FACTOR 8 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01053 Bda08g00019 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00019 Bda-Chr8:179909 Bda03g00433 Bda-Chr3:3736013 4.81E-38 dispersed
Bda13g01362 Bda-Chr13:36128240 Bda08g00019 Bda-Chr8:179909 3.00E-08 dispersed
Bda08g00019 Bda-Chr8:179909 Bda04g00882 Bda-Chr4:58587324 3.83E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16215 PF00320 GATA 1.60E-16 CL0167 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00019 - - rcu:8265656 223.016