Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00033 ATGCAGATTGACCGCCTCTGCTTCGTTTTACCAGTCATGGATGACGACGAGGCGCCTCCCATTCCGACCAAGGAACACAACGGAAGATTTCCTTCTCACTGCGCTGCCCTCTTCCGGGCTCTGTTTCGGAAGCTTTATGCTTCCAAGTGGAATGGCTGCCGCTGCTATAATTTTCACGTTAAACAGTCTTCTGGGGTTTTCCATGATACAGACGGCGTCCAGCTTTCCGAGAAGGTTGGTGGCCATAATCCCAGAATCTTCAGTTTTTCCGAGCTTTATATTGGTTCCAAAGGGTTCAGCGACGATGAAATTCTCGGTAGTGGAGGGTTTGGAAAGGTTTACCGGGCGAAGCTTCCTAGCGATGGAAGTTTGGTGGCGGTTAAGTGCTTGGCGGAGAGAGGAGAACGATTTGAGAAAACGTTTGAGGCTGAATTGGTCGCCGTGGCGCACCTCCGGCACCGGAATCTTGTTCGGCTCAGAGGTTGGTGTGTTCACGACGATCAGCTGTTTCTTGTTTATGACTACATGCCCAATCGAAGTCTCGACCGGGTCCTTTTCCGAAGACCGGAGGAGAAGTCCTCTGCTCTGAACTGGAAACTCCGGAGAAACATAGTTCGTGGTTTGGCCGCCGGACTTTTCTATCTCCACGAGCAGTTAGATACTCAGATCATCCACCGCGATGTGAAAACCAGTAACGTGATGCTCGATTCTAATTTCAATGCTCGGTTAGGGGATTTCGGATTGGCAAGATGGTTAGAACACGAGCTGGAGTATAAAAGCAGAGCGCCTTCCCATGGAAGTCACCGTTTCCGTTTAGGGGAAACGACCAGAATCGGAGGAACGATTGGGTATTTACCGCCAGAGAGTTTTCAGAAACGAAGCGTGGCGACAGCGAAATCCGACGTCTTCAGCTTCGGAATCGTGGTACTAGAGGTGGTTTCTGGGCGGCGAGCGGTGGACCTTGCTTATCCAGATGAACAAATTATTTTGCTCGATTGGATTCGGAGACTTTCCGATGAGAGAAAGGTACTGATCGCAGTAGATAATCGTCTTCCGGATGGATCTTACAAGCTAATTGAAATCGACAGGTTGATTCATCTAGGTCTTCTCTGCACTTTACACAGTCCTGAATCTCGTCCTAACATGAAATGGATTATTGAAGTTCTTTCTGATAATCTTTCCGCTCAGTTACCAAATCTTCCTCCGTTTCAATCTCATCCACAATACATTTCTTTAAATTCGCCGACGGACTCAAGCTCCAACACCGGCGCCACCTCGAGATCCTCTGCAACGAGAGCTAGCACTATAGACTCGTCTTCTTCCTCTTCAATCTTTGTAACAGCTAATGGAGAATCCCTTTTTCTGACTGCTGAGAATGGGGATTGGACTGGCAAAACCAATGGCGTTCTGAACCCTTCTCAGAGTGATCGTCGCCCTCCGACGTGTTTTCAGATGATCGAAACTCCACGGGAAATCTCCTTCAAGGAAATCGTATCGGCGACTAAGAACTTTTCGGAATCGCACAGAGTTGCAGAGCTCGATTTCGGAACTGCCTACTATGGTTTCATCGACAACCGTCATCACGTCCTAATAAAGAGGCTCGGAATGAAGACCTGTCCGGCTTTACGAGCAAGATTCTCCAACGAGCTCCAGAATTTAGGTCGGCTACGGCACCGGAATTTGGTACAGCTCCGGGGATGGTGCACCGAGCAAGGAGAAATGCTCGTTGTTTACGATTACTCAGCAGATCGCCTTCTGAGTCATCTTCTCTTCCACCATTACAACCGGAAAGATAAATCGCCACTGCCGTGGCGTTATAGATACAGCATAATTAAATCCCTAGCTTCCGCCATTCTTTACCTTCACGAAGAATGGGAAGAACAAGTAATCCACAGAAACATCACCTCATCCGCCATTATTCTGGATCCAGACCTAAGCCCGCGCCTCAGCTCCTTCGCGCTCGCAGAATTCCTAACGAGAAACGAGCACGGGCATCACGTCGCCGAAGAAAAAACCAAATCTGCTCGCGGAATCTTCGGCTATATGTCGCCTGAATACATGGAATCCGGGGACGCAACTCCGGAAGCAGACATCTACAGTTTCGGAGTAGTGGTCCTCGAAGTAATCACGGGGCAAATGGCGGCGGATTTCAGGCGGCCGGAGGTGCTGCTGGTCAGAAAAATCCAAGAAATCGAACAGCAGAGAAGATCAATGGAGGAAATTGCAGATATAAGATTAAACTCAGAGTACGACCAGGAAGAGCTGATCAGATTGGTGAAACTGGGAATTGAATGTACCCGATCAGATGCGAGATCAAGGCCGAAAATGAGACAGATCGTGAGTATTTTGGACGGAAATGATAAATTCTTGGTGGAGGGGAAGAAGGAGAGCAGGGAAGAATGGAGAAAACGGAATGCTTCTTCCCTGTCGCTCATCAAGAGGATTCAAGCTTTAGAAACTTCGATCGATCGTACTGACAGAAGTTGA 2487 48.53 MQIDRLCFVLPVMDDDEAPPIPTKEHNGRFPSHCAALFRALFRKLYASKWNGCRCYNFHVKQSSGVFHDTDGVQLSEKVGGHNPRIFSFSELYIGSKGFSDDEILGSGGFGKVYRAKLPSDGSLVAVKCLAERGERFEKTFEAELVAVAHLRHRNLVRLRGWCVHDDQLFLVYDYMPNRSLDRVLFRRPEEKSSALNWKLRRNIVRGLAAGLFYLHEQLDTQIIHRDVKTSNVMLDSNFNARLGDFGLARWLEHELEYKSRAPSHGSHRFRLGETTRIGGTIGYLPPESFQKRSVATAKSDVFSFGIVVLEVVSGRRAVDLAYPDEQIILLDWIRRLSDERKVLIAVDNRLPDGSYKLIEIDRLIHLGLLCTLHSPESRPNMKWIIEVLSDNLSAQLPNLPPFQSHPQYISLNSPTDSSSNTGATSRSSATRASTIDSSSSSSIFVTANGESLFLTAENGDWTGKTNGVLNPSQSDRRPPTCFQMIETPREISFKEIVSATKNFSESHRVAELDFGTAYYGFIDNRHHVLIKRLGMKTCPALRARFSNELQNLGRLRHRNLVQLRGWCTEQGEMLVVYDYSADRLLSHLLFHHYNRKDKSPLPWRYRYSIIKSLASAILYLHEEWEEQVIHRNITSSAIILDPDLSPRLSSFALAEFLTRNEHGHHVAEEKTKSARGIFGYMSPEYMESGDATPEADIYSFGVVVLEVITGQMAADFRRPEVLLVRKIQEIEQQRRSMEEIADIRLNSEYDQEELIRLVKLGIECTRSDARSRPKMRQIVSILDGNDKFLVEGKKESREEWRKRNASSLSLIKRIQALETSIDRTDRS 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 284642 287287 - Bda024424.2 Bda08g00033 10889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00033 828 SMART serkin_6 99 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00033 828 MobiDBLite consensus disorder prediction 406 433 - -
Bda08g00033 828 ProSiteProfiles Protein kinase domain profile. 99 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00033 828 Pfam Protein kinase domain 100 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00033 828 Gene3D Phosphorylase Kinase; domain 1 71 175 - -
Bda08g00033 828 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 819 - -
Bda08g00033 828 Pfam Protein tyrosine and serine/threonine kinase 513 783 IPR001245 GO:0004672|GO:0006468
Bda08g00033 828 SUPERFAMILY Protein kinase-like (PK-like) 479 783 IPR011009 -
Bda08g00033 828 Gene3D Phosphorylase Kinase; domain 1 470 580 - -
Bda08g00033 828 PANTHER - 1 819 - -
Bda08g00033 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Bda08g00033 828 SUPERFAMILY Protein kinase-like (PK-like) 83 407 IPR011009 -
Bda08g00033 828 ProSiteProfiles Protein kinase domain profile. 504 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00033 828 Gene3D Transferase(Phosphotransferase) domain 1 585 807 - -
Bda08g00033 828 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Bda08g00033 828 CDD STKc_IRAK 515 785 - -
Bda08g00033 828 Gene3D Transferase(Phosphotransferase) domain 1 176 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00033 - - - qsu:112022817 1161.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00033 Bda-Chr8:284642 Bda05g00680 Bda-Chr5:55115442 5.66E-56 dispersed
Bda08g00033 Bda-Chr8:284642 Bda15g00542 Bda-Chr15:8488442 3.19E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010661 1 1 0 0 0 1 2 0 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 2 0 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69751 PF07714 PK_Tyr_Ser-Thr 4.70E-28 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00033 Bda_Chr08 FPKM 32.159218 27.286623 29.273556 29.500393 49.115543 55.064281 43.106003 39.96244 32.659199