Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00034 GTGAAAGAATCATCTTCAAACTACTACCCATACCCTCCGCCTCTTGCCAAATACGAGGATGTTATAGCCAACCCGAAGCTTTTCATTTCCAGTTTGGAGAAACTCCATGCTTCTCTTGGAACCAAGTTCATGATCCCCATTATAGGGGGGAAAGAGCTGGACTTGCATCGACTTTTTGTGGAAGTTACTGCTCGTGGTGGCATCGAGAAGATCATCAGAGAAAGACGATGGAAGGAAGTCACGGCCGTTTTCAACTTCCCGTCGACGGCTACCAACGCTTCTTTTGTGCTGAGAAAGTATTACGTTTCGCTGCTTCACCACTTCGAACAAATTTACTTCTTCAAAGCTCAAGGCTATTCCCATGGCTTTGCTGATTCATTGCAGAGCCCTCAGGGAACGCCGTTTTTACATCGGTCGGCTGATAATCAAGAAGCCATGATCCATCGATCGAAACCTAACCCTTCCGCCACTTCCTTCTGGTGTACGGCCGAAATGTTGGGTCGTGGAGCTGGAAATTCGGTCGTCGGAGTAATTGACGGGAAATTCGAAAGTGGGTATCTTGTGACAGTTACGATAGGTTCGGAAACGTTAAAAGGGGTTCTTTACCAAACATCGTTAAACCAGTCGGAAACAGTTTCACTCGGCATGTTTTCCGGCGGTAAAGACATTACTCCAGCAGTTGCCAGTGTTTATCAGGATAAAGCGATGAAAGATAAAGAACGATACAGAGCTGAAATGGAGGAATACAGAGAGAGGCTAAGAACGGGTCAGGTAATTAGAGATGCAGTTCCATTACAACAGCGTCTTCCTCAGCCTGTAAACATGGAAGTAGAAGCTGACGTGAAGATCGAAGAGGCCGAGAATGTGGACTCACCTGAGACGCCATATAACGAGAGTAGTTCGAGTAAATGCGAATCCGAAGATCATCAAATGGCCGAAGATTCAGACGAAAATACATGTCGAAGAAACATTAATGTCGAGATTGCCGTTGAAGATCCAGGTTTTGAGGAGGGAAAGACAGAAGAAAGAGGAGTCGAGGAGTCGTGCAGTCCAATGAAAACGAAAGATGATTAA 1074 45.72 VKESSSNYYPYPPPLAKYEDVIANPKLFISSLEKLHASLGTKFMIPIIGGKELDLHRLFVEVTARGGIEKIIRERRWKEVTAVFNFPSTATNASFVLRKYYVSLLHHFEQIYFFKAQGYSHGFADSLQSPQGTPFLHRSADNQEAMIHRSKPNPSATSFWCTAEMLGRGAGNSVVGVIDGKFESGYLVTVTIGSETLKGVLYQTSLNQSETVSLGMFSGGKDITPAVASVYQDKAMKDKERYRAEMEEYRERLRTGQVIRDAVPLQQRLPQPVNMEVEADVKIEEAENVDSPETPYNESSSSKCESEDHQMAEDSDENTCRRNINVEIAVEDPGFEEGKTEERGVEESCSPMKTKDD 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 290244 291940 + Bda024425.1 Bda08g00034 10890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00034 357 MobiDBLite consensus disorder prediction 332 357 - -
Bda08g00034 357 MobiDBLite consensus disorder prediction 302 321 - -
Bda08g00034 357 SUPERFAMILY ARID-like 20 118 IPR036431 GO:0003677
Bda08g00034 357 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 224 316 - -
Bda08g00034 357 Gene3D - 16 121 IPR036431 GO:0003677
Bda08g00034 357 CDD ARID_HMGB9-like 24 109 IPR045303 GO:0003677
Bda08g00034 357 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 210 - -
Bda08g00034 357 SUPERFAMILY HMG-box 228 252 IPR036910 -
Bda08g00034 357 ProSiteProfiles ARID domain profile. 22 113 IPR001606 GO:0003677
Bda08g00034 357 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 210 - -
Bda08g00034 357 MobiDBLite consensus disorder prediction 284 357 - -
Bda08g00034 357 Coils Coil 232 252 - -
Bda08g00034 357 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 224 316 - -
Bda08g00034 357 Pfam ARID/BRIGHT DNA binding domain 26 109 IPR001606 GO:0003677
Bda08g00034 357 SMART ARID_2 19 109 - -
Bda08g00034 357 SMART bright_3 23 114 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00034 - - - jre:109003447 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00034 Bda-Chr8:290244 Bda12g00990 Bda-Chr12:41215928 6.14E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16217 PF01388 ARID 1.30E-17 CL0123 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00034 Bda_Chr08 FPKM 65.290787 68.468414 0.378116 0.406007 0.58452 0.39679 0.404898 0.0 0.0