Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00037 ATGGGTAAGGAAAAGGTCCACATCAACATTGTTGTCATTGGTCATGTCGACTCTGGAAAGTCTACCACCACCGGCCACCTTATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTCGAGAAAGAAGCTGCTGAAATGAACAAGAGGTCATTCAAGTATGCATGGGTTCTTGATAAGCTTAAGGCAGAGCGTGAGCGTGGTATTACTATTGATATTGCATTGTGGAAATTTGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCTGGACATCGAGACTTTATCAAGAACATGATTACTGGAACTTCCCAAGCAGATTGTGCTGTTCTCATTATCGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAACATGCCCTCCTTGCTTTCACTCTTGGAGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGATGCCACCACACCCAAGTATTCTAAGGCCAGGTACGATGAAATTGTTAAAGAAGTGTCTTCTTACCTGAAGAAGGTTGGATACAACCCTGACAAAATCCCATTTGTTCCCATATCTGGGTTTGAGGGTGATAACATGATTGAGAGATCTACAAACCTTGATTGGTACAAGGGTCCTACCCTCCTCGATGCCCTTGACTTGATCCAGGAGCCCAAGAGGCCTTCAGACAAGCCTCTTCGACTGCCACTTCAGGATGTGTACAAGATTGGTGGTATTGGTACTGTCCCTGTTGGACGAGTTGAAACTGGTGTGCTGAAGCCTGGTATGGTGGTCACCTTTGGGCCAACTGGACTGACCACTGAAGTTAAGTCTGTTGAAATGCATCACGAGGCTCTACAAGAGGCCCTTCCTGGTGACAACGTTGGCTTCAACGTGAAGAATGTTGCAGTGAAAGATCTGAAGCGTGGTTTTGTTGCATCCAACTCCAAAGACGATCCAGCCAGGGAGGCTGCAAATTTCACATCGCAAGTCATTATCATGAACCACCCTGGACAAATTGGGAATGGTTATGCCCCAGTTCTTGATTGCCACACCTCTCACATTGCCGTCAAGTTTGCAGAGATATTGACCAAAATTGACAGGCGTTCTGGGAAAGAGCTTGAGAAGGAGCCCAAGTTTTTGAAGAATGGGGACGCTGGAATGGTTAAGATGATTCCCACCAAGCCCTATGGTGGTGGAGACATTCTCGGAGTATCCTCCGTTGGGTCGTTTTGCTGTCCGTGA 1248 46.71 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPYGGGDILGVSSVGSFCCP 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 299944 301883 - Bda024428.1 Bda08g00037 10893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00037 415 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 412 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bda08g00037 415 Gene3D Translation factors 229 316 - -
Bda08g00037 415 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Bda08g00037 415 CDD EF1_alpha_II 230 320 - -
Bda08g00037 415 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Bda08g00037 415 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 398 - -
Bda08g00037 415 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924|GO:0005525
Bda08g00037 415 Gene3D - 1 226 IPR027417 -
Bda08g00037 415 CDD EF1_alpha_III 323 397 - -
Bda08g00037 415 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Bda08g00037 415 CDD EF1_alpha 9 227 - -
Bda08g00037 415 Gene3D Translation factors 323 399 - -
Bda08g00037 415 PANTHER TRANSLATION FACTOR 1 398 - -
Bda08g00037 415 SUPERFAMILY Translation proteins 231 360 IPR009000 -
Bda08g00037 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Bda08g00037 415 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bda08g00037 415 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bda08g00037 415 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bda08g00037 415 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bda08g00037 415 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Bda08g00037 415 Pfam Elongation factor Tu C-terminal domain 322 397 IPR004160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00037 Bda-Chr8:299944 Bda09g01471 Bda-Chr9:46517877 0 dispersed
Bda11g00347 Bda-Chr11:3873899 Bda08g00037 Bda-Chr8:299944 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00037 K03231 - dct:110098184 801.201