Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00042 ATGGATCCTGTTAACGATTGGGGAAACACCCCTCTTCACGCTGTCGACCCTGAAATCTTCGATCTCATCGAGAAGGAGAAGCGCCGACAATGCCGAGGTATCGAGCTCATCGCCTCCGAGAATTTCACCTCCTTCGCCGTCATTCAGGCTCTCGGAAGTGCTCTCACCAACAAATACTCCGAGGGAATGCCCGGTAACCGTTACTACGGGGGTAACGAGTACATCGACGAGATTGAGAATCTCTGTCGCTCTCGGGCTCTCCAGGTTTTTCACCTCGATCCTACCAAATGGGGCGTCAATGTCCAACCCTACTCCGGTTCCCCTGCGAATTTCGCTGCCTACACGGCTGTCCTTCAGCCTCACGACCGTATTATGGGCCTCGATCTTCCATCCGGGGGCCACCTGACTCACGGCTACTACACCTCCGGTGGGAAGAAGATCTCGGCTACTTCCATCTATTTTGAGAGTTTGCCTTACAAGGTTAATGCTACCACGGGATATATTGATTATGATAGATTGGAGGAGAAGGCTCTGGACTTCAGGCCTCGATTGATCATCTGCGGTGGCAGTGCGTACCCAAGGGACTGGGATTATGCCAGATTTAAGGCAATTGCGGATAAGTGCGGTGCGCTTTTGCTTTGTGATATGGCTCACATTAGCGGTCTCGTTGCTGCTCAGGAAGCTGCGAACCCCTTCGAGTACTGCGACATTGTCACCACAACCACCCATAAAAGCTTGAGGGGTCCAAGGGCTGGTATGATCTTTTACAGGAAGGGTCCTAAACCAGCAAAGAAGGGTCAGCCAGAAGATGCAGTTTATGATTTTGAAGACAAAATCAACTTTGCAGTTTTCCCCTCACTCCAGGGTGGTCCCCACAATCACCAAATTGGGGCCCTTGCTGTTGCTTTGAAGCAAGCAATGTCACCCGGATTCAAAACCTATGCCAAGCAAGTGAAGGCCAATGCTGTAGCCTTAGGAAACTTCTTGATGAGCAAGGGGTATAAACTTGTTACTGGAGGAACTGAAAATCACCTTGTTCTTTGGGATCTTCGTCCTTTGGGCTTAACAGGAAACAAGGTTGAGAAACTTTGTGATTTATGCAACATTACTGTGAATAAGAATGCTGTGTTCGGTGATAGCAGTGCCTTGGCTCCTGGGGGCGTTAGAATTGGTACACCTGCAATGACTTCGAGAGGACTGGTGGAGAAAGACTTTGAGCAAATAGGAGAGTTCCTTCACCGAGCTGTGACAATCACCTTGACCATCCAAAAGGAGCATGGAAAGCTATTGAAGGACTTCAACAAGGGCCTGACAAACAACAAGGACATTGAGAATCTCAAGGTTGATGTGGAGAAGTTCTCTTCCTCCTTTGACATGCCCGGATTCCTCACGTCGGAGATGAAGTTCAAGGATTAG 1416 49.29 MDPVNDWGNTPLHAVDPEIFDLIEKEKRRQCRGIELIASENFTSFAVIQALGSALTNKYSEGMPGNRYYGGNEYIDEIENLCRSRALQVFHLDPTKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNATTGYIDYDRLEEKALDFRPRLIICGGSAYPRDWDYARFKAIADKCGALLLCDMAHISGLVAAQEAANPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPAKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMSPGFKTYAKQVKANAVALGNFLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHRAVTITLTIQKEHGKLLKDFNKGLTNNKDIENLKVDVEKFSSSFDMPGFLTSEMKFKD 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 324555 327377 - Bda024433.1 Bda08g00042 10898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00042 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Bda08g00042 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 - -
Bda08g00042 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Bda08g00042 471 SUPERFAMILY PLP-dependent transferases 7 463 IPR015424 -
Bda08g00042 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bda08g00042 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Bda08g00042 471 PIRSF SHMT 1 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bda08g00042 471 Gene3D - 41 316 IPR015421 GO:0003824
Bda08g00042 471 CDD SHMT 15 419 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bda08g00042 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00042 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - jre:109011697 921.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01142 Bda08g00042 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00512 Bda-Chr3:4329291 Bda08g00042 Bda-Chr8:324555 0 dispersed
Bda08g00042 Bda-Chr8:324555 Bda11g00752 Bda-Chr11:7532732 0 dispersed
Bda05g00648 Bda-Chr5:54664106 Bda08g00042 Bda-Chr8:324555 1.38E-179 transposed
Bda06g00914 Bda-Chr6:21531649 Bda08g00042 Bda-Chr8:324555 1.67E-117 transposed
Bda11g01548 Bda-Chr11:48076677 Bda08g00042 Bda-Chr8:324555 0 transposed
Bda03g01142 Bda-Chr3:12249530 Bda08g00042 Bda-Chr8:324555 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g913 Blo01g00337 Blo12g00102 Bda03g01142 Bda08g00042 Bpe04g01084 . . Bma05g01299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy05g00570 . . . . . . . . . . . . . . . Car17g00083 . . . . . . . . . . . . . . . . . . . Cme05g00731
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00042 Bda_Chr08 FPKM 32.29533 34.434021 33.678993 31.971481 36.183495 36.930767 37.859985 26.606752 27.653679