Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00061 ATGGAAAGGTTGTTTCTGATGGATGAGGAATGCAATGCTGCACCAATTACCTGGAATTACTCATCGTTTGACGTGGATTTCCAGAAATACGACCTGAATTCTGCGTCTGACCAGCTTCAGAACAGTTTTTCGGGTGCGGATTGGGAAAATTCGGTTGAACTGTGTGATCCTCTTGAGTCTGCTTTGAGCTCCATTGTTTCTTCTCCGGCGGCGTCCAATGTCGGCGCTAGCTTTAATTCCGGTGGAGATAAACTAATTGTTAGGGAACTAATAGGGAGGCTGGGAAGCATTTGCGAAGTCGGCGACATTCCAACGCTGGAGTGCATTGGGGGAAAGAAGGACAATACTGATCCCTCGTATGACAGTACGCCATTAAATTCTCCTCCGAAGCTCAATCTGTCAGTGGAAATTCGAGAAGCCAAAGGTCATTCGTCATTTTTTGATAGCAATGTTCTAATCCATTCAAGCTTGAAGCCATTTTCTTCGGACCCTGAGTTTGCTGCGAGAGCTGCTACGTTTTCATCCTTAGCCGCTACAAATGGAGGTCTAAGTAAAGAGATTCCAACGATTCCTGTTATCGAAACTCGAATTGCTGTTCAAGAGCACAGAAAAAGCTCGATTCAGTGTAGAACTTCACTTAGTACGAAATCAAGAAAGTTGTCGAGATCTCTTGGCCGTGAAAATGCAGAGATGGGCGACTCTCGAGAAGGATCTTCTTTGTCTGAGCAAATCTCCTGCAGGGAATCGGCCATGAAAGGGAAAGATGAAGTTGATCTGAACCACAGAAAAAGAAAATTGATTTCAAATGTTAACTCAGAAGAAAAACCACCTCCTTCCTCGGCTAAAATCGCCAAGGTTGAAGGTAGAAACGACGGACCAAATCCAGGCGAAACTTCTGCAAGAAAAAATGATGGAACAAAGACGAAGACAGAAGCAAATGAAGGTAAAAAATCAGGAGAAGATGAAAATCAGAAGAGTACAAAGCTTCCGGAGCCTCCAAAGGATTATATCCATGTCAGAGCAAGAAGAGGTCAAGCTACAGACAGCCATAGTCTCGCAGAGAGAGTTAGAAGAGAAAAAATCAGCGGAAGGATGAAGTTTCTACAAGATCTTGTCCCTGGTTTGAATAAGGTGACAGGAAAAGCAGTGATGCTTGATGAAATTATAAATTATGTTCAATCATTACAACGCCAGGTTGAGTTTCTTTCAATGAAGCTGGCATCAGTTCCTCCAAGTATGAATCTGAACAATGAAGCTCTTCTATCCAAAGATATCATTCAATCTTGTGTATCTTCACAACATATTATAAACCCACTGGACTCCTCTTTAGCGGCATTCGAGATCGGCTGCCAGAGTGTTCCTTCTGAGACAGAGATCCCATACCCAGTAAACTCTTTAAATGCATTTCTCTGCAGAAACCCAGACATTCAAACGATTCATCTTGATGGATACAGTAAAGATGATGATCAACAAGTCTTATCATGCTGGGAAGATGACCTTCAAAGTGTAGTTCAGATGGGTTTTGGACAAAATCAGCAGCAAAACTCGAGATGTTAG 1557 42.65 MERLFLMDEECNAAPITWNYSSFDVDFQKYDLNSASDQLQNSFSGADWENSVELCDPLESALSSIVSSPAASNVGASFNSGGDKLIVRELIGRLGSICEVGDIPTLECIGGKKDNTDPSYDSTPLNSPPKLNLSVEIREAKGHSSFFDSNVLIHSSLKPFSSDPEFAARAATFSSLAATNGGLSKEIPTIPVIETRIAVQEHRKSSIQCRTSLSTKSRKLSRSLGRENAEMGDSREGSSLSEQISCRESAMKGKDEVDLNHRKRKLISNVNSEEKPPPSSAKIAKVEGRNDGPNPGETSARKNDGTKTKTEANEGKKSGEDENQKSTKLPEPPKDYIHVRARRGQATDSHSLAERVRREKISGRMKFLQDLVPGLNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVPPSMNLNNEALLSKDIIQSCVSSQHIINPLDSSLAAFEIGCQSVPSETEIPYPVNSLNAFLCRNPDIQTIHLDGYSKDDDQQVLSCWEDDLQSVVQMGFGQNQQQNSRC 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 491731 493834 - Bda024452.1 Bda08g00061 10917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00061 518 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 49 514 - -
Bda08g00061 518 SMART finulus 351 401 IPR011598 GO:0046983
Bda08g00061 518 Pfam Helix-loop-helix DNA-binding domain 349 396 IPR011598 GO:0046983
Bda08g00061 518 Gene3D - 342 416 IPR036638 GO:0046983
Bda08g00061 518 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 49 514 IPR024097 GO:0006355
Bda08g00061 518 CDD bHLH_AtBPE_like 335 420 - -
Bda08g00061 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 412 IPR036638 GO:0046983
Bda08g00061 518 MobiDBLite consensus disorder prediction 208 335 - -
Bda08g00061 518 MobiDBLite consensus disorder prediction 302 335 - -
Bda08g00061 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 395 IPR011598 GO:0046983
Bda08g00061 518 MobiDBLite consensus disorder prediction 248 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00061 Bda-Chr8:491731 Bda13g00303 Bda-Chr13:3849368 9.41E-91 dispersed
Bda15g00591 Bda-Chr15:9105510 Bda08g00061 Bda-Chr8:491731 4.05E-43 dispersed
Bda08g00061 Bda-Chr8:491731 Bda03g01075 Bda-Chr3:10797734 1.05E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16222 PF00010 HLH 4.00E-05 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00061 - - tcc:18602600 429.098