Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00078 | ATGTTTGATAAAGTAGTGACACCGAGCGATGTGGGAAAGCTAAATCGTTTAGTAATTCCAAAGCAACACGCGGAGAAATACTTCCCTCTCGATTCGTCATCAAGCGAAAAGGGTTTGATTTTGAATTTTGAAGATCGAAACGGAAAATCATGGCGTTTTCGTTATTCTTACTGGAACAGCAGCCAGAGCTGGAGTCGGTTTGTGAAAGAAAAGAAGCTAGATGCTGGGGATGTCGTTTCGTTCAGACGGGGAGTGGGCGAGGTTGGAAAGCATCGTCTTTTCATAGACTGGAGGCGCCGCCCAGATGCGCCGCCGCATCTGGCAGCGCTTGCTCATCTTCCTCAGACAGTGAAATGGGGAAGTAGACAGTTGATTCCTCCGTCAATGGCGGCGTACCCTTCCCACCATTACCGCCATTTTCAAACCCCAAATTACAGTACAATCAATCCGCATTATTATCAAAACGGAGCTTCCGAATACTTCAATGGAGTAACCTTCGAGTCGGGTTCTCTTTATTACTTAAGGCCGTCTTCTTCTTACGCCATCGGAGGACTACAACAAGGTGGGGAAGCTTCTCCAATGGTGATCGATTCTGTGCCAGTAGTCCATCATGGGAAATCTAAACCTAAACGGCTCAGACTGTTTGGTGTGAATTTGGAGTGTCCTGTACCAGAAGAATCCATTACTACTCCTCACTTTTCAAGCTCCTCTTCAAGTCCTCGACCGCCATTTTTAATCGAGTATTCAGCAAGAGGAAAAGCTTCCTCTTCCCTCCAATGGAATCCGCATTGA | 792 | 46.59 | MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSSEKGLILNFEDRNGKSWRFRYSYWNSSQSWSRFVKEKKLDAGDVVSFRRGVGEVGKHRLFIDWRRRPDAPPHLAALAHLPQTVKWGSRQLIPPSMAAYPSHHYRHFQTPNYSTINPHYYQNGASEYFNGVTFESGSLYYLRPSSSYAIGGLQQGGEASPMVIDSVPVVHHGKSKPKRLRLFGVNLECPVPEESITTPHFSSSSSSPRPPFLIEYSARGKASSSLQWNPH | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 721686 | 723500 | - | Bda024478.1 | Bda08g00078 | 10934 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00078 | 263 | SMART | B3_2 | 2 | 101 | IPR003340 | GO:0003677 | |
Bda08g00078 | 263 | Pfam | B3 DNA binding domain | 2 | 100 | IPR003340 | GO:0003677 | |
Bda08g00078 | 263 | CDD | B3_DNA | 1 | 83 | IPR003340 | GO:0003677 | |
Bda08g00078 | 263 | SUPERFAMILY | DNA-binding pseudobarrel domain | 1 | 102 | IPR015300 | - | |
Bda08g00078 | 263 | Gene3D | - | 1 | 108 | IPR015300 | - | |
Bda08g00078 | 263 | ProSiteProfiles | B3 DNA-binding domain profile. | 2 | 101 | IPR003340 | GO:0003677 | |
Bda08g00078 | 263 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 1 | 239 | IPR044800 | GO:0003700 | |
Bda08g00078 | 263 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 1 | 239 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda08g00078 | Bda11g00402 | CCT | |
Bda08g00078 | Bda11g00402 | ECH | |
Bda03g01027 | Bda08g00078 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g00161 | Bda-Chr7:1999022 | Bda08g00078 | Bda-Chr8:721686 | 3.92E-63 | dispersed | |
Bda08g00078 | Bda-Chr8:721686 | Bda11g00402 | Bda-Chr11:4346008 | 2.48E-56 | dispersed | |
Bda03g01027 | Bda-Chr3:9739224 | Bda08g00078 | Bda-Chr8:721686 | 4.36E-157 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16225 | PF02362 | B3 | 8.50E-23 | CL0405 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00078 | - | - | vvi:100259130 | 272.322 |