Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00078 ATGTTTGATAAAGTAGTGACACCGAGCGATGTGGGAAAGCTAAATCGTTTAGTAATTCCAAAGCAACACGCGGAGAAATACTTCCCTCTCGATTCGTCATCAAGCGAAAAGGGTTTGATTTTGAATTTTGAAGATCGAAACGGAAAATCATGGCGTTTTCGTTATTCTTACTGGAACAGCAGCCAGAGCTGGAGTCGGTTTGTGAAAGAAAAGAAGCTAGATGCTGGGGATGTCGTTTCGTTCAGACGGGGAGTGGGCGAGGTTGGAAAGCATCGTCTTTTCATAGACTGGAGGCGCCGCCCAGATGCGCCGCCGCATCTGGCAGCGCTTGCTCATCTTCCTCAGACAGTGAAATGGGGAAGTAGACAGTTGATTCCTCCGTCAATGGCGGCGTACCCTTCCCACCATTACCGCCATTTTCAAACCCCAAATTACAGTACAATCAATCCGCATTATTATCAAAACGGAGCTTCCGAATACTTCAATGGAGTAACCTTCGAGTCGGGTTCTCTTTATTACTTAAGGCCGTCTTCTTCTTACGCCATCGGAGGACTACAACAAGGTGGGGAAGCTTCTCCAATGGTGATCGATTCTGTGCCAGTAGTCCATCATGGGAAATCTAAACCTAAACGGCTCAGACTGTTTGGTGTGAATTTGGAGTGTCCTGTACCAGAAGAATCCATTACTACTCCTCACTTTTCAAGCTCCTCTTCAAGTCCTCGACCGCCATTTTTAATCGAGTATTCAGCAAGAGGAAAAGCTTCCTCTTCCCTCCAATGGAATCCGCATTGA 792 46.59 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSSEKGLILNFEDRNGKSWRFRYSYWNSSQSWSRFVKEKKLDAGDVVSFRRGVGEVGKHRLFIDWRRRPDAPPHLAALAHLPQTVKWGSRQLIPPSMAAYPSHHYRHFQTPNYSTINPHYYQNGASEYFNGVTFESGSLYYLRPSSSYAIGGLQQGGEASPMVIDSVPVVHHGKSKPKRLRLFGVNLECPVPEESITTPHFSSSSSSPRPPFLIEYSARGKASSSLQWNPH 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 721686 723500 - Bda024478.1 Bda08g00078 10934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00078 263 SMART B3_2 2 101 IPR003340 GO:0003677
Bda08g00078 263 Pfam B3 DNA binding domain 2 100 IPR003340 GO:0003677
Bda08g00078 263 CDD B3_DNA 1 83 IPR003340 GO:0003677
Bda08g00078 263 SUPERFAMILY DNA-binding pseudobarrel domain 1 102 IPR015300 -
Bda08g00078 263 Gene3D - 1 108 IPR015300 -
Bda08g00078 263 ProSiteProfiles B3 DNA-binding domain profile. 2 101 IPR003340 GO:0003677
Bda08g00078 263 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 239 IPR044800 GO:0003700
Bda08g00078 263 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 1 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00078 Bda11g00402 CCT
Bda08g00078 Bda11g00402 ECH
Bda03g01027 Bda08g00078 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00161 Bda-Chr7:1999022 Bda08g00078 Bda-Chr8:721686 3.92E-63 dispersed
Bda08g00078 Bda-Chr8:721686 Bda11g00402 Bda-Chr11:4346008 2.48E-56 dispersed
Bda03g01027 Bda-Chr3:9739224 Bda08g00078 Bda-Chr8:721686 4.36E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16225 PF02362 B3 8.50E-23 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00078 - - vvi:100259130 272.322