Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00081 ATGGAAATGAAGCTGGAGAAGAGCAAAGAGGAAGTGGAAGAAGTGGAGGACGACGGTTGCCGTACGGAGGTTGTCAGGTGGGAGAGGTTTCTTCCCAGGATGGCGCTGAGAGTTCTTCTTGTTGAAGCTGATGATTCCACGCGTCGGATAATTTCAGCGCTTCTCCGTAAATGCAGCTATAGAGTTACTGCTGTTTCTGATGGACTACAGGCGTGGGAAACTATAAGGGTTAAACCTCAGAGTATAGATATAATAATGACGGAGGTGGATTTGCCATCAATATCCGGATATGCTCTCCTTACTCTAGTGATGGAACATGAAGTTTGCAAAAACATTCCGGTTATAATGATGTCCTCTCAAGATTCAGTTAGCACGGTCTTCAAGTACATGTTGAGAGGCGCTGTTGACTTTCTTGTTAAACCTCTTAGGAGCAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGGAGGCAGAGTCATGGTGCCGATAATACCTGTAAAGCTGTGGCATCTCTCGAGAATAATGCAGTGAGCAATTATTCAAGCGATCTTGCATCATCCAGACAGAAACAGAAGGAATGCAGTGAGAAGGAGGGCGATACTCAAAGCTCATGTACAATGCCTCATGTGGAAGCTGAGAGTGCATACGCTCAAAACATGCAGGGCTTTGCCAATTTAAAGAGTCGAAGTTCCTCTATTTTGAGCAACACTGGAGAGCCAGAGCATGATCATAGTGGTGTTATGGAAGGCAGAACTGGAGGTGTGTTGGTCATTATTACAGAAAATTTACACGCTATAGGATCAGAATTTCAATCCTGTCATGAAGTCTATTTTGCTACTCCTTTGAGACGGAAAGAAAACTTGGATTCCATCCAAGGAATTAATAAAGAAGGCCATGCAGGATCTGATAGGCATACAGATAAGGAAATTCTCGCTGGTGGAATTAATAGTTGTGATGATGAATGCAATGAACTTTCCTCTAGAGCCATTGATCTGATAGCGACAATAGATTTTAAACAGAAGTGCATGGAAGGAGTATTCAATTATGAAAAAATCCAATCTGCTCCAAAATTGGAACTTTCTTTGAGGCGGACGCATCCAAGTTCATATACCCAAGGGACTGATGAAATGAAATCACTGAACCATTCTAATGCTTCAGCATTTTCATTGTATACTGGTAGTAAGACATGGCAGCCTCCTCTTCATATCATATCTACTGATTCTCATAAATCGGAAGATGGACCTGAACCATCCTCGAGTAAAATCACTCGAGATGAATGTACTTATTCAAAGCACCGTACAAGTAATAAAGGAAATGCAGAAAACCGAGAATCTAATAATTCAGTCCCTGGCCTTGATTTTGATAATGTAGGTGCTGGATACAATCACGCAGTTCAATCCAGTTTTTTTGCTCAATATGGTTTATCCACTGGGTGGAATACCAGACAAACCAGTGAGCAAGGGCAACCCCTATTTACCATGGGAGTCCTTAAACAGCCCAATCCTGAAAAAAGCATAAAACAGGTTTATCTTCAATCACCCAATACTATAAGGAACTCGATGGAGCAGACTGAGCCTGAAAAGAATGTAATAAAGCCTTCAGAAACACCTAGACACGATTCTCCTGCTCCACCTCGTAGTACAAGCAGTACTTTATGTAATGAAACTTCAGATCACAATTGGCAGGAGGCAGTTGAGATGGCTGCTGCAAAGGTTGAGGGTTTAAACGACATTGGTTTTAAAGGGCCTCACTCTGGCTCTCACTTCATGAGCCAGAGGGAAGCAGCTTTAACCAAGTTCCGATTGAAGCGTAAAGATCGATGCTACGAAAAAAAGGTTCGATATCAAAGCCGGAAAAGATTGGCCGAGCAGCGGCCGAGAGTAAAGGGGCAGTTTGTGCGACAAATAAAGGCAGACCCACCAATCACTGAAGCAAGATGTTCATGA 1947 42.84 MEMKLEKSKEEVEEVEDDGCRTEVVRWERFLPRMALRVLLVEADDSTRRIISALLRKCSYRVTAVSDGLQAWETIRVKPQSIDIIMTEVDLPSISGYALLTLVMEHEVCKNIPVIMMSSQDSVSTVFKYMLRGAVDFLVKPLRSNELRNLWQHVWRRQSHGADNTCKAVASLENNAVSNYSSDLASSRQKQKECSEKEGDTQSSCTMPHVEAESAYAQNMQGFANLKSRSSSILSNTGEPEHDHSGVMEGRTGGVLVIITENLHAIGSEFQSCHEVYFATPLRRKENLDSIQGINKEGHAGSDRHTDKEILAGGINSCDDECNELSSRAIDLIATIDFKQKCMEGVFNYEKIQSAPKLELSLRRTHPSSYTQGTDEMKSLNHSNASAFSLYTGSKTWQPPLHIISTDSHKSEDGPEPSSSKITRDECTYSKHRTSNKGNAENRESNNSVPGLDFDNVGAGYNHAVQSSFFAQYGLSTGWNTRQTSEQGQPLFTMGVLKQPNPEKSIKQVYLQSPNTIRNSMEQTEPEKNVIKPSETPRHDSPAPPRSTSSTLCNETSDHNWQEAVEMAAAKVEGLNDIGFKGPHSGSHFMSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQIKADPPITEARCS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 750110 754167 - Bda024482.1 Bda08g00081 10937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00081 648 MobiDBLite consensus disorder prediction 404 451 - -
Bda08g00081 648 Pfam CCT motif 593 635 IPR010402 GO:0005515
Bda08g00081 648 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 6 626 - -
Bda08g00081 648 SMART REC_2 36 151 IPR001789 GO:0000160
Bda08g00081 648 MobiDBLite consensus disorder prediction 406 439 - -
Bda08g00081 648 ProSiteProfiles Response regulatory domain profile. 37 155 IPR001789 GO:0000160
Bda08g00081 648 MobiDBLite consensus disorder prediction 181 206 - -
Bda08g00081 648 MobiDBLite consensus disorder prediction 541 555 - -
Bda08g00081 648 SUPERFAMILY CheY-like 36 161 IPR011006 -
Bda08g00081 648 CDD psREC_PRR 38 141 - -
Bda08g00081 648 ProSiteProfiles CCT domain profile. 593 635 IPR010402 GO:0005515
Bda08g00081 648 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 626 IPR045279 GO:0009736
Bda08g00081 648 MobiDBLite consensus disorder prediction 516 555 - -
Bda08g00081 648 Pfam Response regulator receiver domain 38 149 IPR001789 GO:0000160
Bda08g00081 648 Gene3D - 34 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00081 K12130 PRR5; pseudo-response regulator 5 - qsu:112004762 512.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00081 Bda-Chr8:750110 Bda14g00095 Bda-Chr14:684443 3.52E-54 dispersed
Bda07g01959 Bda-Chr7:36961945 Bda08g00081 Bda-Chr8:750110 7.59E-111 transposed
Bda11g00187 Bda-Chr11:2406265 Bda08g00081 Bda-Chr8:750110 2.61E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g611 . Blo12g00203 . Bda08g00081 . Bpe05g01054 Bma04g00931 Bma05g01202 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0978 . . . . . . . . . Bpe04g00969 . . . . Cmo14g02228 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda07g01573 . 1 163 Response Regulator Gene Family AT1G59940 66.5 1.3e-55 213.8
Bda10g01007 . 1 164 Response Regulator Gene Family AT1G59940 66.7 4.8e-55 211.8
Bda11g01678 . 1 150 Response Regulator Gene Family AT1G59940 67.5 3.0e-49 192.6
Bda14g00828 . 15 152 Response Regulator Gene Family AT1G59940 64.0 6.7e-41 164.9
Bda15g00091 . 8 149 Response Regulator Gene Family AT1G59940 58.5 1.4e-38 157.1
Bda07g01573 . 19 192 Response Regulator Gene Family AT1G10470 63.4 1.4e-54 209.9
Bda10g01007 . 28 190 Response Regulator Gene Family AT1G10470 67.5 4.5e-53 204.9
Bda11g01678 . 15 172 Response Regulator Gene Family AT1G10470 65.4 2.3e-49 192.6
Bda14g00828 . 15 168 Response Regulator Gene Family AT1G10470 60.6 1.8e-41 166.4
Bda15g00091 . 10 171 Response Regulator Gene Family AT1G10470 53.1 5.8e-37 151.4
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda11g01678 . 16 172 Response Regulator Gene Family AT5G62920 71.1 2.6e-53 205.3
Bda07g01573 . 30 160 Response Regulator Gene Family AT5G62920 71.8 4.3e-48 188.0
Bda10g01007 . 30 159 Response Regulator Gene Family AT5G62920 74.6 2.8e-47 185.3
Bda14g00828 . 24 174 Response Regulator Gene Family AT5G62920 65.8 2.6e-45 178.7
Bda15g00091 . 10 152 Response Regulator Gene Family AT5G62920 55.2 2.4e-38 155.6
Bda11g01678 . 5 172 Response Regulator Gene Family AT1G19050 65.3 9.2e-52 200.3
Bda10g01007 . 26 189 Response Regulator Gene Family AT1G19050 60.0 1.4e-44 176.4
Bda07g01573 . 31 205 Response Regulator Gene Family AT1G19050 56.0 2.4e-44 175.6
Bda14g00828 . 23 160 Response Regulator Gene Family AT1G19050 69.1 2.7e-43 172.2
Bda15g00091 . 8 154 Response Regulator Gene Family AT1G19050 53.7 6.4e-37 151.0
Bda15g00091 . 1 149 Response Regulator Gene Family AT2G41310 60.9 2.4e-45 179.1
Bda07g01573 . 33 166 Response Regulator Gene Family AT2G41310 58.2 2.8e-41 165.6
Bda10g01007 . 33 170 Response Regulator Gene Family AT2G41310 58.6 3.0e-40 162.2
Bda11g01678 . 19 147 Response Regulator Gene Family AT2G41310 59.4 7.5e-39 157.5
Bda15g00091 . 1 176 Response Regulator Gene Family AT3G57040 54.5 7.5e-50 194.1
Bda07g01573 . 31 167 Response Regulator Gene Family AT3G57040 58.2 1.8e-43 172.9
Bda10g01007 . 31 161 Response Regulator Gene Family AT3G57040 60.7 7.5e-42 167.5
Bda11g01678 . 23 147 Response Regulator Gene Family AT3G57040 61.0 4.1e-40 161.8
Bda14g00441 . 1 144 Response Regulator Gene Family AT3G57040 55.3 9.5e-37 150.6
Bda11g01678 . 21 172 Response Regulator Gene Family AT1G74890 67.5 4.6e-51 198.0
Bda10g01007 . 23 163 Response Regulator Gene Family AT1G74890 68.1 9.9e-46 180.3
Bda07g01573 . 25 162 Response Regulator Gene Family AT1G74890 66.7 1.3e-45 179.9
Bda14g00828 . 21 174 Response Regulator Gene Family AT1G74890 63.5 1.9e-44 176.0
Bda15g00091 . 4 154 Response Regulator Gene Family AT1G74890 53.0 3.1e-39 158.7
Bda10g01007 . 30 161 Response Regulator Gene Family AT2G40670 62.2 8.5e-40 160.2
Bda07g01573 . 30 157 Response Regulator Gene Family AT2G40670 61.1 1.1e-39 159.8
Bda11g01678 . 23 147 Response Regulator Gene Family AT2G40670 61.8 1.4e-37 152.9
Bda07g01573 . 16 157 Response Regulator Gene Family AT3G56380 57.7 5.0e-42 167.5
Bda10g01007 . 22 161 Response Regulator Gene Family AT3G56380 61.0 5.0e-42 167.5
Bda11g01678 . 16 147 Response Regulator Gene Family AT3G56380 59.0 1.1e-38 156.4
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda03g00757 . 65 297 Response Regulator Gene Family AT5G60100 58.7 6.3e-68 255.0
Bda14g00095 . 41 303 Response Regulator Gene Family AT5G60100 54.4 7.2e-64 241.5
Bda08g00081 . 24 157 Response Regulator Gene Family AT5G60100 61.9 1.1e-43 174.5
Bda14g00095 . 175 316 Response Regulator Gene Family AT5G02810 59.1 2.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014798 1 0 2 2 2 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 1 1 0 0 0 2 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16227 PF00072 Response_reg 7.30E-19 CL0304 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00081 Bda_Chr08 FPKM 19.174564 18.774536 25.070454 23.612492 11.382529 11.521753 14.962144 19.722879 20.735159