Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda08g00105 | ATGATAATCAAAAGAACCTTGAAATTCGAAATGCCAAATCTGAAGCGTTGTAAAGTTGAGGCGCCTGATTCCGAAGACTATATTTGTCCCGTGAATTCGAAGAGACGACAGATGGATGAATGTTGCTTGAATCGTGTGAACGGTGAAGTCGAGGAATGCAGTTCCAGTTCTAGGCGCAGCGACGAGGCATATTTTGCCTGTGAGGTGGAAGTGAAGTTGAAGCAACTTAATGGGCGGAAATTATTGAGCCGTAACCTAGAAAGGGTTCAGCCCCCATTACTGAAATCGTCGCGGGGTCGGCTTCAGATGCGTCCTCCAAAATTCAATGATTCTGTCCTCCATGTATGGAAGAAACAAGAAGCGAAGTTGGACGACTTGAATTCGAATTTAAAAGTAGAAGAAGAATGTGGTGGTTTCGTCGAAGAGAGCGAGAGAGTTAATGGATTGAAATTTACGAAACAAAAGCCAAAAAATTCGAATTGGTATTCAGTACGTAAGTTAGACGGGGCAGATGAACTGGGTGATATGGCCTTCAGTAGTTTTGACTCTAGGAGTTGCTCTAACGTTTCTTGCTCTTCGCAATTGATGGAGACTAAGCCCGTGATTAATCATATGAGCATGGAGCAACTGTCTAACGAAAATTCAGCAAGGAGAAGGGATGTTTATAAACCGGAGGATTTTGCAGTAGGGGATTTGGTTTGGGCGAAGTGTGGGAAACGTTACCCTGCTTGGCCCGCCGTAGTTATTGATCCCCTTTTGGAAGCTCCCGAGGCGGTTCTGAGTTCCTGCGTCGCTGGTGCTATCTGTGTTATGTTTTTTGGGTATTCAAAGAATGGAACGCAAAGGGACTACGCATGGGTGAAGCAAGGAATGTTGTACCCATTCAATGAGTTTTTGGAGAGATTCAGGTGTCAGACGCGGTTGCACAAGAGTAAGCCGGCTGAGTTCCAGATGGCAATTGAGGAGGCATTGCTAGCAGAAGAGGGTTACGTGGACACGGGCGATGGAACTGTGTTAATGGCTGATGGAGAAAGATGTCCGAGTAAAATTCAGAATGATGGGTTTTCGAATCCCGTTGAAGATTCTAATCTGCCGAACAAGCAAGCCAATCAGAAAGATACTAGACCGTGTGATGGCTGTGCCTTGCCTCAGCCATCTAAGATGTTGAAGAAAGTGAAAAGCTCTAGAAATTCGACCCAGCTTTTATGTAGACATTGTTTTAAGTTGAGGAAGTCGAAACAATATTGCGGCATATGCAAGAAAATCTGGCATCATTCTGATGGCGGGGATTGGGTATGCTGCGATGGTTGTAATGTGTGGGTGCATGCTGAATGTGCCAAAATTTCTGGAAAATTTTTTAAGGATCTGGAGCAAAGTGATTATTTTTGCCCTGATTGCAAGGCTGAGTTCAAATATGAAGAGTCACAAAAAGACAAGAGTAAGCCTGTAGTCAAGTCTGTGGAAATTAATGACTTGACATCTATTCCTGATAGACTAACAGTGGTGTGCAATGGCATGGAAGGGACATACATTCCTGGTCTTCATTTGGTTGTCTGTAACTGTGGCTGTGAGCCTAGGAAACAGAGACTCAGTGAATGGGAAAGGCACACTGGTTGCAGAGCAAAGAAATGGAAATATAGTGTGAGAGTCAAGGCTACAATGTTACCTCTGGAACAATGGATTTCAGAGTTTAATACATCTGGTATAGATCCTATCAAGCCTCTATCTTTAAATGCAAACCAGTTTTGCAACTTTTTACAGGCTGAAAAATATGAGCCTGTATATGCCAAATGGACTACAGAAAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGATGATAACAAGATTATTATCTGCAACAGGTGCCAAATAGCTGTCCACCAAGAATGCTATGGGGCAAAAAACGTCCAGGATTTTGCGTCATGGGTTTGTAGAGCTTGTGAAACACCAGATATCAAGAGAGAGTGCTGCCTTTGTCCTGTAAAAGGGGGTGCTTTGAAACCAACTGAGTTTGAGATGCTTTGGATTCATGTCACATGTGCTTGGTTTCAACCTGAAGTTGCTTTCTTGAATCATGAGAAAATGGAACCTGCTGTGGGAATCCTTAGAATTCCATCGATCTCTCTCTTGAAGAGATGTGTAATCTGTAAGCAGAAACACGGCTCCTGCACACAGTGTTGCAAATGTGCCACTTATTTTCATACAATGTGCGCAGCAAGAGCAGGATACTGCATGGAACTGCACTGCACCGAGGAGAAAGGGAGACAAATAACTACGAAGTTAATTTACTGTGCCATTCATAGGACACCCAATATTGATGCTGTTGTGGTTGTGCATAGTCCTTTGGGCATTTTTTCTGCCAGAAGCTTGCTTCCAAACCAGAAAGGATGCTTTAGGGGTTCGAGGCTGGTTTCATCAAAGATTAAAGAACTTCCTGTTTGCCCGACTGTTGAACCCATTGAACTTGAGCCGTTTTCTGCAGCAAAATGCCGCGTTTTCAAACGATCAGCTGATAAGAAGCCTGAAGGGCCACCTATATGTCATCGACTAATGGGGATAAGTCATCATTCTTTAGACGCAGTAGTTACCTTGAGCACATGCACGGAAGTGGAAGATACGAAGGTGTTCTCTTCATTCAAGGAACGACTTCACCATTTGCAAAGGACTGAAAACAATCGGGTCTGTTATGGTAAATCAGGAATACATGGATGGGGCCTCTTTGCTCGCATGAGTATCCAAGAAGGAGAAATGGTTATCGAGTATCGTGGAGAGCAGGTTAGGGGCAGTGTAGCAGATTTGAGAGAGATGAGATACCGGTTAGAAGGAAAAGATTGCTATCTCTTCAAGATTAGTGAAGAACTGGTAATTGATGCCACGAGCAAAGGAAACATAGCTCGGTTAATCAACCATTCATGTATGCCTAACTGTTATGCAAGGATAATGAGTATGGGTGGTGAGAAAAGCCGCATAGTTCTTATTGCAAAGACCAATGTTTCTGCCGGCCAAGAACTCACGTACGATTACTTGTTCGATCCAGATGAACACGACGAGCTGAAAGTCCCGTGCCTTTGCAATGCTCCCAATTGCAGAAAGTTCATGAACTAA | 3108 | 43.63 | MIIKRTLKFEMPNLKRCKVEAPDSEDYICPVNSKRRQMDECCLNRVNGEVEECSSSSRRSDEAYFACEVEVKLKQLNGRKLLSRNLERVQPPLLKSSRGRLQMRPPKFNDSVLHVWKKQEAKLDDLNSNLKVEEECGGFVEESERVNGLKFTKQKPKNSNWYSVRKLDGADELGDMAFSSFDSRSCSNVSCSSQLMETKPVINHMSMEQLSNENSARRRDVYKPEDFAVGDLVWAKCGKRYPAWPAVVIDPLLEAPEAVLSSCVAGAICVMFFGYSKNGTQRDYAWVKQGMLYPFNEFLERFRCQTRLHKSKPAEFQMAIEEALLAEEGYVDTGDGTVLMADGERCPSKIQNDGFSNPVEDSNLPNKQANQKDTRPCDGCALPQPSKMLKKVKSSRNSTQLLCRHCFKLRKSKQYCGICKKIWHHSDGGDWVCCDGCNVWVHAECAKISGKFFKDLEQSDYFCPDCKAEFKYEESQKDKSKPVVKSVEINDLTSIPDRLTVVCNGMEGTYIPGLHLVVCNCGCEPRKQRLSEWERHTGCRAKKWKYSVRVKATMLPLEQWISEFNTSGIDPIKPLSLNANQFCNFLQAEKYEPVYAKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVQDFASWVCRACETPDIKRECCLCPVKGGALKPTEFEMLWIHVTCAWFQPEVAFLNHEKMEPAVGILRIPSISLLKRCVICKQKHGSCTQCCKCATYFHTMCAARAGYCMELHCTEEKGRQITTKLIYCAIHRTPNIDAVVVVHSPLGIFSARSLLPNQKGCFRGSRLVSSKIKELPVCPTVEPIELEPFSAAKCRVFKRSADKKPEGPPICHRLMGISHHSLDAVVTLSTCTEVEDTKVFSSFKERLHHLQRTENNRVCYGKSGIHGWGLFARMSIQEGEMVIEYRGEQVRGSVADLREMRYRLEGKDCYLFKISEELVIDATSKGNIARLINHSCMPNCYARIMSMGGEKSRIVLIAKTNVSAGQELTYDYLFDPDEHDELKVPCLCNAPNCRKFMN | 1035 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 914614 | 922212 | + | Bda024508.1 | Bda08g00105 | 10961 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda08g00105 | 1035 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 1035 | IPR025780 | - | |
| Bda08g00105 | 1035 | SUPERFAMILY | SET domain | 886 | 1032 | IPR046341 | - | |
| Bda08g00105 | 1035 | MobiDBLite | consensus disorder prediction | 354 | 373 | - | - | |
| Bda08g00105 | 1035 | PANTHER | PHD FINGER PROTEINS | 1 | 1035 | - | - | |
| Bda08g00105 | 1035 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE ATX3 | 1 | 1035 | - | - | |
| Bda08g00105 | 1035 | Gene3D | - | 216 | 332 | - | - | |
| Bda08g00105 | 1035 | ProSiteProfiles | PWWP domain profile. | 229 | 298 | IPR000313 | - | |
| Bda08g00105 | 1035 | Pfam | PHD-finger | 415 | 468 | IPR019787 | - | |
| Bda08g00105 | 1035 | SUPERFAMILY | FYVE/PHD zinc finger | 601 | 665 | IPR011011 | - | |
| Bda08g00105 | 1035 | CDD | SET_SETD1-like | 882 | 1031 | - | - | |
| Bda08g00105 | 1035 | Pfam | PHD-zinc-finger like domain | 656 | 768 | - | - | |
| Bda08g00105 | 1035 | Gene3D | SET domain | 827 | 1035 | IPR046341 | - | |
| Bda08g00105 | 1035 | ProSitePatterns | Zinc finger PHD-type signature. | 603 | 648 | IPR019786 | - | |
| Bda08g00105 | 1035 | SMART | PHD_3 | 713 | 769 | IPR001965 | - | |
| Bda08g00105 | 1035 | SMART | PHD_3 | 415 | 467 | IPR001965 | - | |
| Bda08g00105 | 1035 | SMART | PHD_3 | 602 | 649 | IPR001965 | - | |
| Bda08g00105 | 1035 | Pfam | SET domain | 904 | 1009 | IPR001214 | GO:0005515 | |
| Bda08g00105 | 1035 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 407 | 474 | IPR013083 | - | |
| Bda08g00105 | 1035 | SUPERFAMILY | Tudor/PWWP/MBT | 220 | 329 | - | - | |
| Bda08g00105 | 1035 | SMART | set_7 | 893 | 1016 | IPR001214 | GO:0005515 | |
| Bda08g00105 | 1035 | Pfam | PHD-finger | 615 | 649 | - | - | |
| Bda08g00105 | 1035 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 654 | 769 | IPR034732 | - | |
| Bda08g00105 | 1035 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 594 | 651 | IPR013083 | - | |
| Bda08g00105 | 1035 | ProSiteProfiles | Post-SET domain profile. | 1019 | 1035 | IPR003616 | - | |
| Bda08g00105 | 1035 | MobiDBLite | consensus disorder prediction | 354 | 375 | - | - | |
| Bda08g00105 | 1035 | ProSiteProfiles | Zinc finger PHD-type profile. | 413 | 469 | IPR019787 | - | |
| Bda08g00105 | 1035 | SUPERFAMILY | FYVE/PHD zinc finger | 413 | 471 | IPR011011 | - | |
| Bda08g00105 | 1035 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 652 | 770 | IPR013083 | - | |
| Bda08g00105 | 1035 | SMART | PostSET_3 | 1019 | 1035 | IPR003616 | - | |
| Bda08g00105 | 1035 | CDD | PHD_ATX3_4_5_like | 602 | 648 | IPR042011 | - | |
| Bda08g00105 | 1035 | Pfam | PWWP domain | 230 | 325 | IPR000313 | - | |
| Bda08g00105 | 1035 | ProSiteProfiles | SET domain profile. | 893 | 1010 | IPR001214 | GO:0005515 | |
| Bda08g00105 | 1035 | CDD | PHD_TCF19_like | 416 | 466 | - | - | |
| Bda08g00105 | 1035 | ProSiteProfiles | Zinc finger PHD-type profile. | 600 | 651 | IPR019787 | - | |
| Bda08g00105 | 1035 | SMART | PWWP_4 | 227 | 296 | IPR000313 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda08g00105 | - | - | - | csv:101210760 | 1412.51 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00120 | Bda-Chr5:5923931 | Bda08g00105 | Bda-Chr8:914614 | 0 | dispersed | |
| Bda08g00105 | Bda-Chr8:914614 | Bda08g00345 | Bda-Chr8:3530950 | 1.47E-43 | dispersed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi5g1131 | . | . | . | Bda08g00105 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | |
| Vvi15g714 | Blo01g00243 | . | . | Bda08g00105 | . | Bpe05g01032 | . | Bma05g01266 | Cmo08g00133 | Cmo17g00522 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone14ag0017 | Cone15ag0019 | . | . | . | Csa06g00714 | Chy11g01890 | . | . | . | . | . | . | . | . | . | Sed08g1875 | . | . | Cma08g00131 | Cma17g00544 | Car08g00078 | . | Cpe17g01032 | Cpe12g00460 | Bhi12g02296 | Tan06g1734 | Cmetu03g1498 | Lac12g0933 | . | . | . | Cla06g00111 | Cam06g0105 | Cec06g0123 | Cco06g0122 | Clacu06g0124 | Cmu06g0121 | Cre06g0891 | Lsi09g01819 | . | . | Cme11g02426 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009985 | 1 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 33 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16233 | PF13832 | zf-HC5HC2H_2 | 9.70E-26 | CL0390 | Bda | TR |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bda08g00105 | Bda_Chr08 | FPKM | 6.580388 | 5.763517 | 6.910818 | 7.513607 | 10.923615 | 10.290516 | 13.021381 | 4.277657 | 4.557584 |