Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00108 ATGGATGGAGATCGAAAATGCCTTACAGTGGACGGGCCACTTGAGATAACTGCATGTGTTCTCCGATCGTTTATTGATCTCTTCTACGTTCTTCACATAATATTCAGATTTCGGACAGGATTTATCGCCCCATCATCTCGAGTCTTCGGTCGAGGGGCGTTAGTCCACGATCCTTCTGCCATAGCAAAAAGATACTTATCTTCCTACTTCCTTGTTGACATTTTGTCGATTCTTCCATTGCCACAAGTTGCGATTCTGTTTATTGTTCCTTCGTGTAGAAGCCCGCAGCCGATGCTGACAAAGGAGATGTTGATATACATCATTTTCTTGCAGTACGTTCCGAGACTTTTTCGGATTTATCCATTGTTCGAAGAAGTAACTACTTCTTCCGGGATACTTACCGAAACTGCTTGGGGTGGAGCTGCATTCAACCTTCTCCTTTATTTACTAGCAAGTCACATTGTTGGGGCGTGTTGGTACATATTTTCGGTGGCACGGGAAGAACAATGTTGGCTTGATGAGTGTAGTAAGATGAAGCGATGTAACAGCACGTTGTTGTATTGCCGAGGAAACTCTCTTAGCAAAGCTGGTAATCCATTCAAGGATCTGTGTAAGCTTATCAAACCCGACGACATAAATGAACCTGGCGAATTCAACTTGGGGATTTTCTTTGATGCCATACGGTCCCGAATTGTGCAGTCGAAGGATTTCCGTAAGAAGTTCTCGTATTGTTTATGGTGGGGTCTTCGAAACGTTAGTTCTTTGGGATCGAATCTTCAAACCAGCACTTTCCCAGGGGAGATCGTCTTTGCTGCATCAATAACAATTCTTGGTTTGATTTTGTTGGCGTTGCTCATCGGAAATATGCAGAAATATTTGCAATCGACAACGATGAGAATAGAAGAGATGAGGGTGAGAAGACGGGATGCAGAGCATTGGATGTCTCACCGTATGCTCCCGAAACCTTTGAGGGAACGACTAAGACGGTACGAACAATACAAATGGCAGGAAACCAGGGGGGTCGAGGAAGATGGTTTAGTCTCGAAGCTTCCGAAAGATCTACGCAGAGACATTAAACGACACCTTTGCTTGGATCTTCTAATGAAAGTGCCCCTATTTCAAACTATGGATGAACAGCTAGTAGATGCTATGTGTGATTGTCTCAAACCAATGTTGTACACAGAAAATAGCTCAGTCATTCGAGAGGGTGATCCAGTTGATTTGATGCTATTTATTATGAGAGGATATTTGAAAACTACAACAACATATGGTGGAAAAGCTGGATTTTTCAACACTGCCAAACTAAAACCAGGAGATTTTTGTGGAGACGAGCTTCTTACCTGGGCATTGGATCCAAATCCAAATTCCTCAACAATACTTCCCTGCTCAACTAGAACAGTGGAGTCTCTCACAGAGGTTGAGGCTTTTGCCTTAAAGGCCGAAGACTTGAAGTCTGTGGCTTCCCAATTTAGACGTCTTCACAGCAAACAGTTCCAACATACATTCAGGTATGATTCATTAATAGCTTTTTATCAAGCTCAAAGAATTCAAACCCTACGGCTCAAAACCTAA 1572 42.88 MDGDRKCLTVDGPLEITACVLRSFIDLFYVLHIIFRFRTGFIAPSSRVFGRGALVHDPSAIAKRYLSSYFLVDILSILPLPQVAILFIVPSCRSPQPMLTKEMLIYIIFLQYVPRLFRIYPLFEEVTTSSGILTETAWGGAAFNLLLYLLASHIVGACWYIFSVAREEQCWLDECSKMKRCNSTLLYCRGNSLSKAGNPFKDLCKLIKPDDINEPGEFNLGIFFDAIRSRIVQSKDFRKKFSYCLWWGLRNVSSLGSNLQTSTFPGEIVFAASITILGLILLALLIGNMQKYLQSTTMRIEEMRVRRRDAEHWMSHRMLPKPLRERLRRYEQYKWQETRGVEEDGLVSKLPKDLRRDIKRHLCLDLLMKVPLFQTMDEQLVDAMCDCLKPMLYTENSSVIREGDPVDLMLFIMRGYLKTTTTYGGKAGFFNTAKLKPGDFCGDELLTWALDPNPNSSTILPCSTRTVESLTEVEAFALKAEDLKSVASQFRRLHSKQFQHTFRYDSLIAFYQAQRIQTLRLKT 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 937727 939895 - Bda024511.2 Bda08g00108 10964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00108 523 Pfam Ion transport protein 16 297 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bda08g00108 523 Pfam Cyclic nucleotide-binding domain 393 489 IPR000595 -
Bda08g00108 523 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 507 - -
Bda08g00108 523 Gene3D - 8 296 - -
Bda08g00108 523 Gene3D Jelly Rolls 370 492 IPR014710 -
Bda08g00108 523 CDD CAP_ED 372 504 IPR000595 -
Bda08g00108 523 SMART cnmp_10 372 505 IPR000595 -
Bda08g00108 523 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 10-RELATED 4 507 - -
Bda08g00108 523 SUPERFAMILY cAMP-binding domain-like 302 496 IPR018490 -
Bda08g00108 523 Gene3D Helix hairpin bin 299 363 - -
Bda08g00108 523 ProSiteProfiles cAMP/cGMP binding motif profile. 372 459 IPR000595 -
Bda08g00108 523 SUPERFAMILY Voltage-gated potassium channels 16 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00108 Bda-Chr8:937727 Bda12g00522 Bda-Chr12:7998729 8.95E-179 dispersed
Bda08g00108 Bda-Chr8:937727 Bda15g00779 Bda-Chr15:11637413 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00108 K05391 - twl:119982713 680.248