Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda08g00140 | ATGGGGTTTCCGGTTGGGTATACGGAGGTCTTCTTCCCCAATCTCTTTCTCCATCTGCTTTCTCTACTGGGTTACGTCAGAAGCCTCATTTCATCTCTCTTCCACTTCCTGGGTCTCTCCGATTTCGTCGAAACAGACGCCGTTTGGCCCGAAACGCAGAGCCGAGTCTCCGATTCTCCCTCCGTATCGGCGCTCCTGATCCGAGAATTGCTGCCGGTCATCAAGTTTTCGGAGCTCGTAGCGGCTTCCGGCGGAGGAGAGTCTCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAAGGAGGGGAGGAGATCAGAAGACTCACAAACTGTAAGCACATTTTCCACAGAGATTGCTTGGACCGGTGGATGGATCATGATCAGAAAACGTGTCCTCTCTGTAGGACACCATTTTTGCCGGACGAGATGCAGAACGAGCTAAATCAGCGGCTATGGGCGGCCACCGGAGCATCAGATTTTTACAGTGAATACAGTTCCGTCTGA | 504 | 52.78 | MGFPVGYTEVFFPNLFLHLLSLLGYVRSLISSLFHFLGLSDFVETDAVWPETQSRVSDSPSVSALLIRELLPVIKFSELVAASGGGESPESCAVCLYEFEGGEEIRRLTNCKHIFHRDCLDRWMDHDQKTCPLCRTPFLPDEMQNELNQRLWAATGASDFYSEYSSV | 167 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1319207 | 1319710 | + | Bda024550.1 | Bda08g00140 | 10996 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda08g00140 | 167 | Pfam | Ring finger domain | 91 | 135 | IPR001841 | - | |
| Bda08g00140 | 167 | ProSiteProfiles | Zinc finger RING-type profile. | 92 | 135 | IPR001841 | - | |
| Bda08g00140 | 167 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 91 | 135 | - | - | |
| Bda08g00140 | 167 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 142 | IPR013083 | - | |
| Bda08g00140 | 167 | SMART | ring_2 | 92 | 134 | IPR001841 | - | |
| Bda08g00140 | 167 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 165 | - | - | |
| Bda08g00140 | 167 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 165 | - | - | |
| Bda08g00140 | 167 | SUPERFAMILY | RING/U-box | 91 | 141 | - | - | |
| Bda08g00140 | 167 | SMART | ringv_2 | 91 | 135 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01830 | Bda-Chr1:54423203 | Bda08g00140 | Bda-Chr8:1319207 | 8.99E-15 | dispersed | |
| Bda04g00073 | Bda-Chr4:1559646 | Bda08g00140 | Bda-Chr8:1319207 | 1.25E-17 | dispersed | |
| Bda06g00433 | Bda-Chr6:6408731 | Bda08g00140 | Bda-Chr8:1319207 | 1.92E-17 | dispersed | |
| Bda08g00140 | Bda-Chr8:1319207 | Bda10g00114 | Bda-Chr10:2802264 | 1.41E-19 | dispersed | |
| Bda08g00511 | Bda-Chr8:5180809 | Bda08g00140 | Bda-Chr8:1319207 | 4.22E-48 | transposed | |
| Bda03g00991 | Bda-Chr3:8976749 | Bda08g00140 | Bda-Chr8:1319207 | 1.05E-101 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda08g00140 | K16281 | - | zju:107432943 | 282.722 |