Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00149 ATGGACTCCGATGATGATATGCATGACGCCCACGACGCCGAGTCTTTTGATGATGATTTCTACAGCGGAGACTTTGATTATTGCAGCGATGATGATGATTTCGAAGCTGACGAATCGGTCGAGGAAGATGTCGATGATCTTGATAAAATTGAGTCTGGTCGCCAGGAGATAAATTATACGATATTGAAAGAATCTGATATACGGGAACGTCAAGAGGATGATATTACTAGAATATCGACAGTACTTTCAATTACACGTGTTGCAGCTACCATCATACTTCGCCACTTTAATTGGGATGTTAGTAAAGTGCATGATGAGTGGTTTGCTGATGAAGAAAGAGTGAGAAAGCAACTTGGCTTGTTGGATGATCCAGTTCAGATTTTAAATGGTTGTGAAGTTACTTGTGGGATATGTTTTGACTCCTATCCTCTGGGTGGGATCAAATCAGCAGCTTGTGGTCATCCTTTTTGCACTTCATGTTGGAAAGGTTACATTGGAACATCCATTAATGATGGTCCTGGATGTTTACTGTTGAGATGTCCTGATCCATCTTGTGGTGCTGCTGTTGGTCGAGACATGATTAATTTGTTGGCTTGCAATGAAGACAGGGAAAAGTATTCTCGATATCTTTTGAGGTCTTTTGTTGAAGACAATAAACAGACGAAATGGTGCCCAGCACCGGGTTGTGAGTTTGCTGTGATTTATTGTGCTGGTAACAGCAACTATGACGTTACTTGCCTGTGTTCTTATGGCTTTTGTTGGAAATGTACGGAGGAAGCTCACCGTCCCGTAGACTGTGGTACTGTGGAGAAGTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAATTGGATTTTAGCTAATTCCAAGCCATGTCCAAAGTGTAAGCGGCCAATTGAGAAGAACCACGGGTGCATGCATATGACGTGCACGCCACCTTGTAAATTCGAATTTTGCTGGCTATGCCTAGGTGTATGGTCTGATCATGGTGAGAGAACAGGTGGTTTTTATGCCTGTAATCGTTATGAAACAGCTAAACAAGAAGGCGTGTATGATGAAGCCGAGAGAAGAAGGGAAATGGCTAAAAGCTCTCTAGAGAGATACACCCATTACTATGAACGTTGGGCAAGCAATCAGTCGTCAAGACAGAAAGCTCTAGCGGATTTGTATCAAATGGAAACTGTACATATTGAGAAACTTAGTGACACACAATGCACTCCTGAATCTCAGCTCAAATTCATAACAGAGGCCTGGCTACAGATAATTGAGTGTAGGCGGGTTCTGAAGTGGACATACGCATATGGGTACTACCTTCCAGAAAATGAACAAGCTAAAAGACAGTTTTTTGAGTACTTGCAAGGCGATGCAGAGTCTAATTTAGAAAGGCTTCATCAATGTGCAGAGAAGGAACTGCAACAGTTCCTTGCTGCTGACGGGCCATCAAAAGAATTTAATGATTTTCGTACAAAGTTGGCTGGTTTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTCAGAGCTTTAGAAAATGGTCTCTCGGATGTGGATGCTCACAAAACTTGCAGCGGGACCAGCAGCTCAAAGACTGCTGCTGGAAGCATCAAAGTAAGACCCGGAAGGAGCAAGGGAAATTCAGTTCGCACCAGTGGTTCGAGCCGAAATGTGGATAATTCTAGTTTTTGGTCGTGTGATCAATGTACCTATGCCAATCATACGGCTGCAACTACTTGCCAGATGTGCCTCCAACGAAGG 1758 42.95 MDSDDDMHDAHDAESFDDDFYSGDFDYCSDDDDFEADESVEEDVDDLDKIESGRQEINYTILKESDIRERQEDDITRISTVLSITRVAATIILRHFNWDVSKVHDEWFADEERVRKQLGLLDDPVQILNGCEVTCGICFDSYPLGGIKSAACGHPFCTSCWKGYIGTSINDGPGCLLLRCPDPSCGAAVGRDMINLLACNEDREKYSRYLLRSFVEDNKQTKWCPAPGCEFAVIYCAGNSNYDVTCLCSYGFCWKCTEEAHRPVDCGTVEKWIMKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDEAERRREMAKSSLERYTHYYERWASNQSSRQKALADLYQMETVHIEKLSDTQCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPENEQAKRQFFEYLQGDAESNLERLHQCAEKELQQFLAADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDAHKTCSGTSSSKTAAGSIKVRPGRSKGNSVRTSGSSRNVDNSSFWSCDQCTYANHTAATTCQMCLQRR 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1419256 1424895 + Bda033793 Bda08g00149 11005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00149 586 SUPERFAMILY Ran binding protein zinc finger-like 559 585 IPR036443 -
Bda08g00149 586 SUPERFAMILY RING/U-box 132 213 - -
Bda08g00149 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 534 IPR031127 GO:0004842|GO:0016567
Bda08g00149 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 218 IPR013083 -
Bda08g00149 586 SMART ibrneu5 204 266 IPR002867 -
Bda08g00149 586 SMART ibrneu5 270 340 IPR002867 -
Bda08g00149 586 MobiDBLite consensus disorder prediction 522 558 - -
Bda08g00149 586 MobiDBLite consensus disorder prediction 19 45 - -
Bda08g00149 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 33 534 - -
Bda08g00149 586 MobiDBLite consensus disorder prediction 1 18 - -
Bda08g00149 586 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Bda08g00149 586 MobiDBLite consensus disorder prediction 1 45 - -
Bda08g00149 586 Gene3D - 262 517 - -
Bda08g00149 586 CDD RING-HC_RBR_TRIAD1_like 135 185 - -
Bda08g00149 586 SUPERFAMILY RING/U-box 285 333 - -
Bda08g00149 586 SMART zf_4 561 585 IPR001876 -
Bda08g00149 586 ProSiteProfiles Zinc finger RanBP2 type profile. 559 586 IPR001876 -
Bda08g00149 586 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Bda08g00149 586 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Bda08g00149 586 Pfam IBR domain, a half RING-finger domain 283 330 IPR002867 -
Bda08g00149 586 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 -
Bda08g00149 586 MobiDBLite consensus disorder prediction 544 558 - -
Bda08g00149 586 Pfam Ariadne domain 353 514 IPR045840 -
Bda08g00149 586 SUPERFAMILY RING/U-box 204 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00086 Bda-Chr7:1098479 Bda08g00149 Bda-Chr8:1419256 2.59E-14 dispersed
Bda08g00149 Bda-Chr8:1419256 Bda13g01841 Bda-Chr13:42525546 5.46E-118 dispersed
Bda08g00149 Bda-Chr8:1419256 Bda09g01473 Bda-Chr9:46530656 1.69E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00149 K11968 - gmx:100810427 927.161