Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00149 | ATGGACTCCGATGATGATATGCATGACGCCCACGACGCCGAGTCTTTTGATGATGATTTCTACAGCGGAGACTTTGATTATTGCAGCGATGATGATGATTTCGAAGCTGACGAATCGGTCGAGGAAGATGTCGATGATCTTGATAAAATTGAGTCTGGTCGCCAGGAGATAAATTATACGATATTGAAAGAATCTGATATACGGGAACGTCAAGAGGATGATATTACTAGAATATCGACAGTACTTTCAATTACACGTGTTGCAGCTACCATCATACTTCGCCACTTTAATTGGGATGTTAGTAAAGTGCATGATGAGTGGTTTGCTGATGAAGAAAGAGTGAGAAAGCAACTTGGCTTGTTGGATGATCCAGTTCAGATTTTAAATGGTTGTGAAGTTACTTGTGGGATATGTTTTGACTCCTATCCTCTGGGTGGGATCAAATCAGCAGCTTGTGGTCATCCTTTTTGCACTTCATGTTGGAAAGGTTACATTGGAACATCCATTAATGATGGTCCTGGATGTTTACTGTTGAGATGTCCTGATCCATCTTGTGGTGCTGCTGTTGGTCGAGACATGATTAATTTGTTGGCTTGCAATGAAGACAGGGAAAAGTATTCTCGATATCTTTTGAGGTCTTTTGTTGAAGACAATAAACAGACGAAATGGTGCCCAGCACCGGGTTGTGAGTTTGCTGTGATTTATTGTGCTGGTAACAGCAACTATGACGTTACTTGCCTGTGTTCTTATGGCTTTTGTTGGAAATGTACGGAGGAAGCTCACCGTCCCGTAGACTGTGGTACTGTGGAGAAGTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAATTGGATTTTAGCTAATTCCAAGCCATGTCCAAAGTGTAAGCGGCCAATTGAGAAGAACCACGGGTGCATGCATATGACGTGCACGCCACCTTGTAAATTCGAATTTTGCTGGCTATGCCTAGGTGTATGGTCTGATCATGGTGAGAGAACAGGTGGTTTTTATGCCTGTAATCGTTATGAAACAGCTAAACAAGAAGGCGTGTATGATGAAGCCGAGAGAAGAAGGGAAATGGCTAAAAGCTCTCTAGAGAGATACACCCATTACTATGAACGTTGGGCAAGCAATCAGTCGTCAAGACAGAAAGCTCTAGCGGATTTGTATCAAATGGAAACTGTACATATTGAGAAACTTAGTGACACACAATGCACTCCTGAATCTCAGCTCAAATTCATAACAGAGGCCTGGCTACAGATAATTGAGTGTAGGCGGGTTCTGAAGTGGACATACGCATATGGGTACTACCTTCCAGAAAATGAACAAGCTAAAAGACAGTTTTTTGAGTACTTGCAAGGCGATGCAGAGTCTAATTTAGAAAGGCTTCATCAATGTGCAGAGAAGGAACTGCAACAGTTCCTTGCTGCTGACGGGCCATCAAAAGAATTTAATGATTTTCGTACAAAGTTGGCTGGTTTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTCAGAGCTTTAGAAAATGGTCTCTCGGATGTGGATGCTCACAAAACTTGCAGCGGGACCAGCAGCTCAAAGACTGCTGCTGGAAGCATCAAAGTAAGACCCGGAAGGAGCAAGGGAAATTCAGTTCGCACCAGTGGTTCGAGCCGAAATGTGGATAATTCTAGTTTTTGGTCGTGTGATCAATGTACCTATGCCAATCATACGGCTGCAACTACTTGCCAGATGTGCCTCCAACGAAGG | 1758 | 42.95 | MDSDDDMHDAHDAESFDDDFYSGDFDYCSDDDDFEADESVEEDVDDLDKIESGRQEINYTILKESDIRERQEDDITRISTVLSITRVAATIILRHFNWDVSKVHDEWFADEERVRKQLGLLDDPVQILNGCEVTCGICFDSYPLGGIKSAACGHPFCTSCWKGYIGTSINDGPGCLLLRCPDPSCGAAVGRDMINLLACNEDREKYSRYLLRSFVEDNKQTKWCPAPGCEFAVIYCAGNSNYDVTCLCSYGFCWKCTEEAHRPVDCGTVEKWIMKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDEAERRREMAKSSLERYTHYYERWASNQSSRQKALADLYQMETVHIEKLSDTQCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPENEQAKRQFFEYLQGDAESNLERLHQCAEKELQQFLAADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDAHKTCSGTSSSKTAAGSIKVRPGRSKGNSVRTSGSSRNVDNSSFWSCDQCTYANHTAATTCQMCLQRR | 586 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1419256 | 1424895 | + | Bda033793 | Bda08g00149 | 11005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00149 | 586 | SUPERFAMILY | Ran binding protein zinc finger-like | 559 | 585 | IPR036443 | - | |
Bda08g00149 | 586 | SUPERFAMILY | RING/U-box | 132 | 213 | - | - | |
Bda08g00149 | 586 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 33 | 534 | IPR031127 | GO:0004842|GO:0016567 | |
Bda08g00149 | 586 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 218 | IPR013083 | - | |
Bda08g00149 | 586 | SMART | ibrneu5 | 204 | 266 | IPR002867 | - | |
Bda08g00149 | 586 | SMART | ibrneu5 | 270 | 340 | IPR002867 | - | |
Bda08g00149 | 586 | MobiDBLite | consensus disorder prediction | 522 | 558 | - | - | |
Bda08g00149 | 586 | MobiDBLite | consensus disorder prediction | 19 | 45 | - | - | |
Bda08g00149 | 586 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 33 | 534 | - | - | |
Bda08g00149 | 586 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Bda08g00149 | 586 | ProSiteProfiles | TRIAD supradomain profile. | 131 | 344 | IPR044066 | - | |
Bda08g00149 | 586 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Bda08g00149 | 586 | Gene3D | - | 262 | 517 | - | - | |
Bda08g00149 | 586 | CDD | RING-HC_RBR_TRIAD1_like | 135 | 185 | - | - | |
Bda08g00149 | 586 | SUPERFAMILY | RING/U-box | 285 | 333 | - | - | |
Bda08g00149 | 586 | SMART | zf_4 | 561 | 585 | IPR001876 | - | |
Bda08g00149 | 586 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 559 | 586 | IPR001876 | - | |
Bda08g00149 | 586 | ProSitePatterns | Zinc finger RanBP2-type signature. | 563 | 582 | IPR001876 | - | |
Bda08g00149 | 586 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 179 | IPR001841 | - | |
Bda08g00149 | 586 | Pfam | IBR domain, a half RING-finger domain | 283 | 330 | IPR002867 | - | |
Bda08g00149 | 586 | Pfam | IBR domain, a half RING-finger domain | 204 | 266 | IPR002867 | - | |
Bda08g00149 | 586 | MobiDBLite | consensus disorder prediction | 544 | 558 | - | - | |
Bda08g00149 | 586 | Pfam | Ariadne domain | 353 | 514 | IPR045840 | - | |
Bda08g00149 | 586 | SUPERFAMILY | RING/U-box | 204 | 273 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g00086 | Bda-Chr7:1098479 | Bda08g00149 | Bda-Chr8:1419256 | 2.59E-14 | dispersed | |
Bda08g00149 | Bda-Chr8:1419256 | Bda13g01841 | Bda-Chr13:42525546 | 5.46E-118 | dispersed | |
Bda08g00149 | Bda-Chr8:1419256 | Bda09g01473 | Bda-Chr9:46530656 | 1.69E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00149 | K11968 | - | gmx:100810427 | 927.161 |