Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00149 ATGGACTCCGATGATGATATGCATGACGCCCACGACGCCGAGTCTTTTGATGATGATTTCTACAGCGGAGACTTTGATTATTGCAGCGATGATGATGATTTCGAAGCTGACGAATCGGTCGAGGAAGATGTCGATGATCTTGATAAAATTGAGTCTGGTCGCCAGGAGATAAATTATACGATATTGAAAGAATCTGATATACGGGAACGTCAAGAGGATGATATTACTAGAATATCGACAGTACTTTCAATTACACGTGTTGCAGCTACCATCATACTTCGCCACTTTAATTGGGATGTTAGTAAAGTGCATGATGAGTGGTTTGCTGATGAAGAAAGAGTGAGAAAGCAACTTGGCTTGTTGGATGATCCAGTTCAGATTTTAAATGGTTGTGAAGTTACTTGTGGGATATGTTTTGACTCCTATCCTCTGGGTGGGATCAAATCAGCAGCTTGTGGTCATCCTTTTTGCACTTCATGTTGGAAAGGTTACATTGGAACATCCATTAATGATGGTCCTGGATGTTTACTGTTGAGATGTCCTGATCCATCTTGTGGTGCTGCTGTTGGTCGAGACATGATTAATTTGTTGGCTTGCAATGAAGACAGGGAAAAGTATTCTCGATATCTTTTGAGGTCTTTTGTTGAAGACAATAAACAGACGAAATGGTGCCCAGCACCGGGTTGTGAGTTTGCTGTGATTTATTGTGCTGGTAACAGCAACTATGACGTTACTTGCCTGTGTTCTTATGGCTTTTGTTGGAAATGTACGGAGGAAGCTCACCGTCCCGTAGACTGTGGTACTGTGGAGAAGTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAATTGGATTTTAGCTAATTCCAAGCCATGTCCAAAGTGTAAGCGGCCAATTGAGAAGAACCACGGGTGCATGCATATGACGTGCACGCCACCTTGTAAATTCGAATTTTGCTGGCTATGCCTAGGTGTATGGTCTGATCATGGTGAGAGAACAGGTGGTTTTTATGCCTGTAATCGTTATGAAACAGCTAAACAAGAAGGCGTGTATGATGAAGCCGAGAGAAGAAGGGAAATGGCTAAAAGCTCTCTAGAGAGATACACCCATTACTATGAACGTTGGGCAAGCAATCAGTCGTCAAGACAGAAAGCTCTAGCGGATTTGTATCAAATGGAAACTGTACATATTGAGAAACTTAGTGACACACAATGCACTCCTGAATCTCAGCTCAAATTCATAACAGAGGCCTGGCTACAGATAATTGAGTGTAGGCGGGTTCTGAAGTGGACATACGCATATGGGTACTACCTTCCAGAAAATGAACAAGCTAAAAGACAGTTTTTTGAGTACTTGCAAGGCGATGCAGAGTCTAATTTAGAAAGGCTTCATCAATGTGCAGAGAAGGAACTGCAACAGTTCCTTGCTGCTGACGGGCCATCAAAAGAATTTAATGATTTTCGTACAAAGTTGGCTGGTTTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTCAGAGCTTTAGAAAATGGTCTCTCGGATGTGGATGCTCACAAAACTTGCAGCGGGACCAGCAGCTCAAAGACTGCTGCTGGAAGCATCAAAGTAAGACCCGGAAGGAGCAAGGGAAATTCAGTTCGCACCAGTGGTTCGAGCCGAAATGTGGATAATTCTAGTTTTTGGTCGTGTGATCAATGTACCTATGCCAATCATACGGCTGCAACTACTTGCCAGATGTGCCTCCAACGAAGG 1758 42.95 MDSDDDMHDAHDAESFDDDFYSGDFDYCSDDDDFEADESVEEDVDDLDKIESGRQEINYTILKESDIRERQEDDITRISTVLSITRVAATIILRHFNWDVSKVHDEWFADEERVRKQLGLLDDPVQILNGCEVTCGICFDSYPLGGIKSAACGHPFCTSCWKGYIGTSINDGPGCLLLRCPDPSCGAAVGRDMINLLACNEDREKYSRYLLRSFVEDNKQTKWCPAPGCEFAVIYCAGNSNYDVTCLCSYGFCWKCTEEAHRPVDCGTVEKWIMKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDEAERRREMAKSSLERYTHYYERWASNQSSRQKALADLYQMETVHIEKLSDTQCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPENEQAKRQFFEYLQGDAESNLERLHQCAEKELQQFLAADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDAHKTCSGTSSSKTAAGSIKVRPGRSKGNSVRTSGSSRNVDNSSFWSCDQCTYANHTAATTCQMCLQRR 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1419256 1424895 + Bda033793 Bda08g00149 11005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00149 586 SUPERFAMILY Ran binding protein zinc finger-like 559 585 IPR036443 -
Bda08g00149 586 SUPERFAMILY RING/U-box 132 213 - -
Bda08g00149 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 534 IPR031127 GO:0004842|GO:0016567
Bda08g00149 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 218 IPR013083 -
Bda08g00149 586 SMART ibrneu5 204 266 IPR002867 -
Bda08g00149 586 SMART ibrneu5 270 340 IPR002867 -
Bda08g00149 586 MobiDBLite consensus disorder prediction 522 558 - -
Bda08g00149 586 MobiDBLite consensus disorder prediction 19 45 - -
Bda08g00149 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 33 534 - -
Bda08g00149 586 MobiDBLite consensus disorder prediction 1 18 - -
Bda08g00149 586 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Bda08g00149 586 MobiDBLite consensus disorder prediction 1 45 - -
Bda08g00149 586 Gene3D - 262 517 - -
Bda08g00149 586 CDD RING-HC_RBR_TRIAD1_like 135 185 - -
Bda08g00149 586 SUPERFAMILY RING/U-box 285 333 - -
Bda08g00149 586 SMART zf_4 561 585 IPR001876 -
Bda08g00149 586 ProSiteProfiles Zinc finger RanBP2 type profile. 559 586 IPR001876 -
Bda08g00149 586 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Bda08g00149 586 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Bda08g00149 586 Pfam IBR domain, a half RING-finger domain 283 330 IPR002867 -
Bda08g00149 586 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 -
Bda08g00149 586 MobiDBLite consensus disorder prediction 544 558 - -
Bda08g00149 586 Pfam Ariadne domain 353 514 IPR045840 -
Bda08g00149 586 SUPERFAMILY RING/U-box 204 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00149 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - gmx:100810427 927.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00086 Bda-Chr7:1098479 Bda08g00149 Bda-Chr8:1419256 2.59E-14 dispersed
Bda08g00149 Bda-Chr8:1419256 Bda13g01841 Bda-Chr13:42525546 5.46E-118 dispersed
Bda08g00149 Bda-Chr8:1419256 Bda09g01473 Bda-Chr9:46530656 1.69E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00149 . 58 533 ARIADNE family AT1G05890 71.7 2.2e-215 745.3
Bda13g01841 . 9 624 ARIADNE family AT1G05890 55.0 1.3e-202 703.0
Bda13g01841 . 18 628 ARIADNE family AT1G65430 66.9 5.7e-237 817.0
Bda08g00149 . 54 586 ARIADNE family AT1G65430 68.2 5.7e-229 790.4
Bda08g00149 . 54 449 ARIADNE family AT2G31780 56.9 1.3e-140 496.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00149 Bda_Chr08 FPKM 42.408207 47.148746 27.760756 30.342251 16.172163 16.767532 16.451473 37.731365 39.470432